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  5. Zm00001d004448_T001

Zm00001d004448_T001


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0005765 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005765_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d004448_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d004448_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_237
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_51


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012334 Pectin_lyas_fold Gene3D 99 441
IPR018082 AmbAllergen PRINTS 348 367
IPR018082 AmbAllergen PRINTS 246 267
IPR018082 AmbAllergen PRINTS 146 171
IPR018082 AmbAllergen PRINTS 122 139
IPR018082 AmbAllergen PRINTS 390 414
IPR018082 AmbAllergen PRINTS 326 345
IPR018082 AmbAllergen PRINTS 182 198
IPR018082 AmbAllergen PRINTS 419 442
IPR002022 Pec_lyase SMART 174 371
IPR002022 Pec_lyase Pfam 182 363
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 76 443
IPR045032 PEL PANTHER 30 445
IPR018082 AmbAllergen PRINTS 348 367
IPR018082 AmbAllergen PRINTS 246 267
IPR018082 AmbAllergen PRINTS 146 171
IPR018082 AmbAllergen PRINTS 122 139
IPR018082 AmbAllergen PRINTS 390 414
IPR018082 AmbAllergen PRINTS 326 345
IPR018082 AmbAllergen PRINTS 182 198
IPR018082 AmbAllergen PRINTS 419 442
IPR002022 Pec_lyase SMART 174 371
IPR012334 Pectin_lyas_fold Gene3D 99 441
IPR002022 Pec_lyase Pfam 182 363
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 76 443
IPR045032 PEL PANTHER 50 445

No CAZYmes available for this sequence

No external refs found!