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  5. Zm00001d004667_T003

Zm00001d004667_T003


Description : Sec23/Sec24 protein transport family protein


Gene families : OG_01_0001904 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001904_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d004667_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d004667_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_64
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58


Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
CC GO:0030127 COPII vesicle coat ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006895 Znf_Sec23_Sec24 Pfam 421 459
IPR006896 Sec23/24_trunk_dom Pfam 496 728
IPR036465 vWFA_dom_sf Gene3D 498 730
IPR036180 Gelsolin-like_dom_sf SUPERFAMILY 932 1101
IPR036465 vWFA_dom_sf SUPERFAMILY 496 728
IPR029006 ADF-H/Gelsolin-like_dom_sf Gene3D 932 1081
IPR012990 Sec23_24_beta_S Pfam 733 817
IPR006900 Sec23/24_helical_dom Pfam 828 924
IPR036174 Znf_Sec23_Sec24_sf SUPERFAMILY 408 494
IPR036175 Sec23/24_helical_dom_sf SUPERFAMILY 828 930
IPR007123 Gelsolin-like_dom Pfam 955 1006
IPR036180 Gelsolin-like_dom_sf SUPERFAMILY 932 1101
IPR036175 Sec23/24_helical_dom_sf SUPERFAMILY 828 930
IPR006900 Sec23/24_helical_dom Pfam 828 923
IPR006896 Sec23/24_trunk_dom Pfam 496 728
IPR036465 vWFA_dom_sf SUPERFAMILY 496 728
IPR006895 Znf_Sec23_Sec24 Pfam 421 459
IPR012990 Sec23_24_beta_S Pfam 733 816
IPR036174 Znf_Sec23_Sec24_sf SUPERFAMILY 408 494
IPR036465 vWFA_dom_sf Gene3D 498 730
IPR029006 ADF-H/Gelsolin-like_dom_sf Gene3D 932 1081

No CAZYmes available for this sequence

No external refs found!