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  5. Zm00001d004972_T001

Zm00001d004972_T001


Description : Calcium-binding EF-hand family protein


Gene families : OG_01_0011527 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011527_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d004972_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d004972_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_220
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_121


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002048 EF_hand_dom CDD 122 184
IPR002048 EF_hand_dom ProSiteProfiles 154 187
IPR002048 EF_hand_dom Pfam 120 184
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 167 179
IPR002048 EF_hand_dom ProSiteProfiles 117 152
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 130 142
IPR011992 EF-hand-dom_pair SUPERFAMILY 117 183
IPR002048 EF_hand_dom SMART 158 186
IPR002048 EF_hand_dom SMART 121 149
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 130 142
IPR011992 EF-hand-dom_pair SUPERFAMILY 117 183
IPR002048 EF_hand_dom ProSiteProfiles 117 152
IPR002048 EF_hand_dom CDD 122 184
IPR002048 EF_hand_dom Pfam 122 145
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 167 179
IPR002048 EF_hand_dom SMART 158 186
IPR002048 EF_hand_dom SMART 121 149
IPR002048 EF_hand_dom ProSiteProfiles 154 187

No CAZYmes available for this sequence

No external refs found!