Zm00001d004993_T003

Description : RNA binding (RRM/RBD/RNP motifs) family protein

Gene families : OG_01_0001588 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001588_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d004993_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d004993_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_288
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000504	RRM_dom	Pfam	387	442
IPR000504	RRM_dom	Pfam	234	307
IPR035445	GYF-like_dom_sf	SUPERFAMILY	11	65
IPR000504	RRM_dom	ProSiteProfiles	363	448
IPR034392	TatSF1-like_RRM1	CDD	231	325
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	363	445
IPR034393	TatSF1-like	PANTHER	70	475
IPR035979	RBD_domain_sf	SUPERFAMILY	227	324
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	231	317
IPR035979	RBD_domain_sf	SUPERFAMILY	358	444
IPR003954	RRM_dom_euk	SMART	364	444
IPR000504	RRM_dom	ProSiteProfiles	232	321
IPR025640	GYF_2	Pfam	15	65
IPR000504	RRM_dom	SMART	233	317
IPR000504	RRM_dom	SMART	364	444
IPR000504	RRM_dom	ProSiteProfiles	363	448
IPR035445	GYF-like_dom_sf	SUPERFAMILY	11	65
IPR003954	RRM_dom_euk	SMART	364	444
IPR035979	RBD_domain_sf	SUPERFAMILY	358	444
IPR034393	TatSF1-like	PANTHER	83	473
IPR000504	RRM_dom	ProSiteProfiles	232	321
IPR000504	RRM_dom	SMART	233	317
IPR000504	RRM_dom	SMART	364	444
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	363	445
IPR035979	RBD_domain_sf	SUPERFAMILY	227	324
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	231	317
IPR025640	GYF_2	Pfam	15	65
IPR034392	TatSF1-like_RRM1	CDD	231	325
IPR000504	RRM_dom	Pfam	387	442
IPR000504	RRM_dom	Pfam	234	307

No CAZYmes available for this sequence

External Links

No external refs found!