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  5. Zm00001d005090_T106

Zm00001d005090_T106


Description : Clathrin, heavy chain


Gene families : OG_01_0001847 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001847_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d005090_T106
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d005090_T106
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58


Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle ISM GOs from InterProScan
CC GO:0030132 clathrin coat of coated pit ISM GOs from InterProScan
MF GO:0032051 clathrin light chain binding ISM GOs from InterProScan
CC GO:0071439 clathrin complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR016025 Clathrin_H-chain_N SUPERFAMILY 5 343
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1288 1434
IPR016024 ARM-type_fold SUPERFAMILY 901 1067
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1437 1580
IPR016341 Clathrin_heavy_chain PIRSF 3 1686
IPR015348 Clathrin_H-chain_linker_core Pfam 344 367
IPR016024 ARM-type_fold SUPERFAMILY 345 500
IPR016025 Clathrin_H-chain_N Gene3D 1 377
IPR011990 TPR-like_helical_dom_sf Gene3D 1057 1196
IPR011990 TPR-like_helical_dom_sf Gene3D 1197 1536
IPR011990 TPR-like_helical_dom_sf Gene3D 902 1056
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 700 842
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 993 1138
IPR016024 ARM-type_fold SUPERFAMILY 457 793
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 551 697
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1142 1283
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 847 986
IPR016024 ARM-type_fold SUPERFAMILY 1196 1531
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 850 984
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1291 1431
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 557 692
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 701 840
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1439 1579
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 993 1131
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1145 1281
IPR022365 Clathrin_H-chain_propeller_rpt Pfam 208 247
IPR022365 Clathrin_H-chain_propeller_rpt Pfam 155 197
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1288 1434
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1142 1283
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1437 1596
IPR000547 Clathrin_H-chain/VPS_repeat SMART 847 986
IPR000547 Clathrin_H-chain/VPS_repeat SMART 551 693
IPR000547 Clathrin_H-chain/VPS_repeat SMART 700 842
IPR000547 Clathrin_H-chain/VPS_repeat SMART 993 1138
IPR016024 ARM-type_fold SUPERFAMILY 1052 1195
IPR016024 ARM-type_fold SUPERFAMILY 1052 1195
IPR015348 Clathrin_H-chain_linker_core Pfam 344 367
IPR011990 TPR-like_helical_dom_sf Gene3D 1057 1196
IPR011990 TPR-like_helical_dom_sf Gene3D 1197 1536
IPR011990 TPR-like_helical_dom_sf Gene3D 902 1056
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 993 1138
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 993 1131
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1292 1431
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 557 690
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 701 840
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1440 1579
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1147 1281
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 850 983
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1288 1434
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1142 1283
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1288 1434
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1142 1283
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1437 1596
IPR000547 Clathrin_H-chain/VPS_repeat SMART 847 986
IPR000547 Clathrin_H-chain/VPS_repeat SMART 551 693
IPR000547 Clathrin_H-chain/VPS_repeat SMART 993 1138
IPR000547 Clathrin_H-chain/VPS_repeat SMART 700 842
IPR016341 Clathrin_heavy_chain PIRSF 3 1686
IPR016024 ARM-type_fold SUPERFAMILY 457 793
IPR022365 Clathrin_H-chain_propeller_rpt Pfam 154 197
IPR022365 Clathrin_H-chain_propeller_rpt Pfam 208 247
IPR016024 ARM-type_fold SUPERFAMILY 345 500
IPR016025 Clathrin_H-chain_N SUPERFAMILY 5 343
IPR016024 ARM-type_fold SUPERFAMILY 901 1067
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 551 697
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 847 986
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 700 842
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1437 1580
IPR016025 Clathrin_H-chain_N Gene3D 1 377
IPR016024 ARM-type_fold SUPERFAMILY 1196 1531

No CAZYmes available for this sequence

No external refs found!