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  5. Zm00001d005276_T007

Zm00001d005276_T007


Description : poly(A) binding protein 2


Gene families : OG_01_0007205 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007205_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d005276_T007
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d005276_T007
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_107


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR034364 PABP_RRM1 CDD 36 115
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 299 404
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 117 204
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 205 298
IPR035979 RBD_domain_sf SUPERFAMILY 34 204
IPR000504 RRM_dom ProSiteProfiles 35 113
IPR002004 PABP_HYD Pfam 560 625
IPR000504 RRM_dom Pfam 125 192
IPR000504 RRM_dom Pfam 216 284
IPR000504 RRM_dom Pfam 319 387
IPR000504 RRM_dom Pfam 37 107
IPR045305 RRM2_I_PABPs CDD 121 197
IPR003954 RRM_dom_euk SMART 318 390
IPR003954 RRM_dom_euk SMART 36 109
IPR003954 RRM_dom_euk SMART 124 196
IPR003954 RRM_dom_euk SMART 215 287
IPR002004 PABP_HYD SMART 565 628
IPR000504 RRM_dom ProSiteProfiles 123 195
IPR002004 PABP_HYD ProSiteProfiles 553 630
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 4 116
IPR000504 RRM_dom ProSiteProfiles 317 394
IPR000504 RRM_dom ProSiteProfiles 214 291
IPR000504 RRM_dom SMART 36 109
IPR000504 RRM_dom SMART 318 390
IPR000504 RRM_dom SMART 215 287
IPR000504 RRM_dom SMART 124 196
IPR006515 PABP_1234 NCBIfam 36 626
IPR036053 PABP-dom SUPERFAMILY 496 638
IPR035979 RBD_domain_sf SUPERFAMILY 214 397
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 4 116
IPR035979 RBD_domain_sf SUPERFAMILY 214 397
IPR003954 RRM_dom_euk SMART 318 390
IPR003954 RRM_dom_euk SMART 36 109
IPR003954 RRM_dom_euk SMART 124 196
IPR003954 RRM_dom_euk SMART 215 287
IPR006515 PABP_1234 TIGRFAM 36 626
IPR002004 PABP_HYD ProSiteProfiles 553 630
IPR000504 RRM_dom SMART 36 109
IPR000504 RRM_dom SMART 318 390
IPR000504 RRM_dom SMART 215 287
IPR000504 RRM_dom SMART 124 196
IPR036053 PABP-dom SUPERFAMILY 496 638
IPR000504 RRM_dom ProSiteProfiles 317 394
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 117 204
IPR045305 RRM2_I_PABPs CDD 121 197
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 299 404
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 205 298
IPR000504 RRM_dom ProSiteProfiles 35 113
IPR002004 PABP_HYD SMART 565 628
IPR000504 RRM_dom ProSiteProfiles 123 195
IPR000504 RRM_dom Pfam 37 107
IPR000504 RRM_dom Pfam 319 387
IPR000504 RRM_dom Pfam 125 192
IPR000504 RRM_dom Pfam 216 284
IPR002004 PABP_HYD Pfam 561 625
IPR035979 RBD_domain_sf SUPERFAMILY 34 204
IPR000504 RRM_dom ProSiteProfiles 214 291

No CAZYmes available for this sequence

No external refs found!