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  5. Zm00001d005322_T001

Zm00001d005322_T001


Description : Histone superfamily protein


Gene families : OG_01_0037267 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0037267_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d005322_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d005322_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_113


Type GO Term Name Evidence Source
CC GO:0000786 nucleosome ISM GOs from InterProScan
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0046982 protein heterodimerization activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000558 Histone_H2B SMART 151 259
IPR009072 Histone-fold Gene3D 116 260
IPR009072 Histone-fold SUPERFAMILY 157 259
IPR000558 Histone_H2B PRINTS 192 212
IPR000558 Histone_H2B PRINTS 214 231
IPR000558 Histone_H2B PRINTS 231 244
IPR000558 Histone_H2B PRINTS 244 257
IPR000558 Histone_H2B PRINTS 173 191
IPR007125 Histone_H2A/H2B/H3 Pfam 121 236
IPR000558 Histone_H2B PANTHER 132 259
IPR000558 Histone_H2B PANTHER 1 260
IPR009072 Histone-fold Gene3D 116 260
IPR007125 Histone_H2A/H2B/H3 Pfam 120 236
IPR009072 Histone-fold SUPERFAMILY 157 259
IPR000558 Histone_H2B SMART 151 259
IPR000558 Histone_H2B PRINTS 192 212
IPR000558 Histone_H2B PRINTS 214 231
IPR000558 Histone_H2B PRINTS 231 244
IPR000558 Histone_H2B PRINTS 244 257
IPR000558 Histone_H2B PRINTS 173 191

No CAZYmes available for this sequence

No external refs found!