Zm00001d005449_T001

Description : RPA70-kDa subunit B

Gene families : OG_01_0011033 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011033_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d005449_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d005449_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_36
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_293

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISM	GOs from InterProScan
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006310	DNA recombination	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	ISM	GOs from InterProScan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012340	NA-bd_OB-fold	SUPERFAMILY	190	248
IPR012340	NA-bd_OB-fold	Gene3D	77	165
IPR030189	UPS_plant	PANTHER	1	62
IPR012340	NA-bd_OB-fold	SUPERFAMILY	87	160
IPR009834	Ureide_permease	Pfam	1	60
IPR004591	Rfa1	PANTHER	94	200
IPR012340	NA-bd_OB-fold	SUPERFAMILY	87	160
IPR012340	NA-bd_OB-fold	SUPERFAMILY	190	248
IPR009834	Ureide_permease	Pfam	1	60
IPR004591	Rfa1	PANTHER	200	248

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d005449_T001

Expression Profile

Co-expression Networks

Functional Annotation