Zm00001d005454_T001

No description available

Gene families : OG_01_0007440 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007440_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d005454_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d005454_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_229
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_8

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	None	Extended
BP	GO:0017148	negative regulation of translation	ISM	GOs from InterProScan
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030597	RNA glycosylase activity	None	Extended
MF	GO:0030598	rRNA N-glycosylase activity	ISM	GOs from InterProScan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0034248	regulation of amide metabolic process	None	Extended
BP	GO:0034249	negative regulation of amide metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140102	catalytic activity, acting on a rRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000772	Ricin_B_lectin	Pfam	470	582
IPR000772	Ricin_B_lectin	Pfam	332	453
IPR000772	Ricin_B_lectin	SMART	329	456
IPR000772	Ricin_B_lectin	SMART	463	585
IPR035992	Ricin_B-like_lectins	SUPERFAMILY	466	584
IPR036041	Ribosome-inact_prot_sf	SUPERFAMILY	40	290
IPR017989	Ribosome_inactivat_1/2	PRINTS	50	63
IPR017989	Ribosome_inactivat_1/2	PRINTS	231	248
IPR017989	Ribosome_inactivat_1/2	PRINTS	101	116
IPR017989	Ribosome_inactivat_1/2	PRINTS	197	217
IPR035992	Ricin_B-like_lectins	SUPERFAMILY	325	456
IPR016139	Ribosome_inactivat_prot_sub2	Gene3D	211	313
IPR000772	Ricin_B_lectin	CDD	466	584
IPR000772	Ricin_B_lectin	CDD	331	454
IPR016138	Ribosome_inactivat_prot_sub1	Gene3D	32	208
IPR001574	Ribosome_inactivat_prot	PANTHER	39	373
IPR001574	Ribosome_inactivat_prot	Pfam	48	248
IPR000772	Ricin_B_lectin	CDD	466	584
IPR000772	Ricin_B_lectin	Pfam	470	582
IPR000772	Ricin_B_lectin	Pfam	333	453
IPR036041	Ribosome-inact_prot_sf	SUPERFAMILY	40	290
IPR000772	Ricin_B_lectin	SMART	329	456
IPR000772	Ricin_B_lectin	SMART	463	585
IPR016138	Ribosome_inactivat_prot_sub1	Gene3D	32	208
IPR035992	Ricin_B-like_lectins	SUPERFAMILY	466	584
IPR035992	Ricin_B-like_lectins	SUPERFAMILY	325	456
IPR000772	Ricin_B_lectin	ProSiteProfiles	328	456
IPR000772	Ricin_B_lectin	ProSiteProfiles	454	585
IPR001574	Ribosome_inactivat_prot	PANTHER	1	586
IPR017989	Ribosome_inactivat_1/2	PRINTS	50	63
IPR017989	Ribosome_inactivat_1/2	PRINTS	231	248
IPR017989	Ribosome_inactivat_1/2	PRINTS	101	116
IPR017989	Ribosome_inactivat_1/2	PRINTS	197	217
IPR000772	Ricin_B_lectin	CDD	331	454
IPR016139	Ribosome_inactivat_prot_sub2	Gene3D	211	313
IPR001574	Ribosome_inactivat_prot	Pfam	48	248

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
CBM13	188	587	1.1e-13	470	584

External Links

No external refs found!

Zm00001d005454_T001

Expression Profile

Co-expression Networks

Functional Annotation