Zm00001d006160_T001

Description : DEAD box RNA helicase (PRH75)

Gene families : OG_01_0009467 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009467_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d006160_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d006160_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_64
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_205

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001650	Helicase_C	ProSiteProfiles	365	523
IPR014001	Helicase_ATP-bd	ProSiteProfiles	154	336
IPR012562	GUCT	Pfam	558	653
IPR014001	Helicase_ATP-bd	SMART	142	354
IPR027417	P-loop_NTPase	Gene3D	358	575
IPR027417	P-loop_NTPase	Gene3D	66	338
IPR000629	RNA-helicase_DEAD-box_CS	ProSitePatterns	280	288
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	148	324
IPR001650	Helicase_C	Pfam	366	468
IPR027417	P-loop_NTPase	SUPERFAMILY	202	481
IPR001650	Helicase_C	SMART	387	468
IPR035979	RBD_domain_sf	SUPERFAMILY	562	643
IPR012562	GUCT	Pfam	558	653
IPR014001	Helicase_ATP-bd	SMART	142	354
IPR027417	P-loop_NTPase	Gene3D	66	338
IPR001650	Helicase_C	Pfam	369	468
IPR014001	Helicase_ATP-bd	ProSiteProfiles	154	336
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	147	325
IPR000629	RNA-helicase_DEAD-box_CS	ProSitePatterns	280	288
IPR001650	Helicase_C	SMART	387	468
IPR027417	P-loop_NTPase	Gene3D	358	575
IPR035979	RBD_domain_sf	SUPERFAMILY	562	643
IPR001650	Helicase_C	ProSiteProfiles	365	523
IPR027417	P-loop_NTPase	SUPERFAMILY	202	481

No CAZYmes available for this sequence

External Links

No external refs found!