Zm00001d006294_T001

Description : RNA recognition motif and CCHC-type zinc finger domains containing protein

Gene families : OG_01_0018563 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018563_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d006294_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d006294_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_21
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_77

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	None	Extended
CC	GO:0005689	U12-type spliceosomal complex	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003954	RRM_dom_euk	SMART	55	128
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	40	207
IPR000504	RRM_dom	ProSiteProfiles	54	132
IPR001878	Znf_CCHC	Pfam	150	165
IPR036875	Znf_CCHC_sf	SUPERFAMILY	141	167
IPR001878	Znf_CCHC	ProSiteProfiles	150	166
IPR001878	Znf_CCHC	SMART	150	166
IPR000504	RRM_dom	SMART	55	128
IPR044598	ZCRB1	PANTHER	11	266
IPR000504	RRM_dom	Pfam	56	125
IPR035979	RBD_domain_sf	SUPERFAMILY	51	144
IPR036875	Znf_CCHC_sf	SUPERFAMILY	141	167
IPR034219	ZCRB1_RRM	CDD	53	130
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	40	207
IPR000504	RRM_dom	Pfam	56	125
IPR001878	Znf_CCHC	Pfam	150	165
IPR001878	Znf_CCHC	SMART	150	166
IPR000504	RRM_dom	ProSiteProfiles	54	132
IPR000504	RRM_dom	SMART	55	128
IPR044598	ZCRB1	PANTHER	10	265
IPR035979	RBD_domain_sf	SUPERFAMILY	51	144
IPR003954	RRM_dom_euk	SMART	55	128
IPR001878	Znf_CCHC	ProSiteProfiles	150	166

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d006294_T001

Expression Profile

Co-expression Networks

Functional Annotation