1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d006296_T008

Zm00001d006296_T008


Description : valyl-tRNA synthetase / valine--tRNA ligase (VALRS)


Gene families : OG_01_0000817 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000817_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d006296_T008
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d006296_T008
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_239


Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISM GOs from InterProScan
MF GO:0002161 aminoacyl-tRNA editing activity ISM GOs from InterProScan
MF GO:0004812 aminoacyl-tRNA ligase activity ISM GOs from InterProScan
MF GO:0004832 valine-tRNA ligase activity ISM GOs from InterProScan
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0006418 tRNA aminoacylation for protein translation ISM GOs from InterProScan
BP GO:0006438 valyl-tRNA aminoacylation ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002303 Valyl-tRNA_ligase Hamap 511 1467
IPR009080 tRNAsynth_Ia_anticodon-bd SUPERFAMILY 1155 1417
IPR009008 Val/Leu/Ile-tRNA-synth_edit Gene3D 760 840
IPR014729 Rossmann-like_a/b/a_fold Gene3D 512 710
IPR037118 Val-tRNA_synth_C_sf Gene3D 1395 1466
IPR013103 RVT_2 Pfam 146 387
IPR002303 Valyl-tRNA_ligase PRINTS 756 773
IPR002303 Valyl-tRNA_ligase PRINTS 1019 1037
IPR002303 Valyl-tRNA_ligase PRINTS 545 556
IPR002303 Valyl-tRNA_ligase PRINTS 873 886
IPR002303 Valyl-tRNA_ligase PRINTS 988 1009
IPR013155 M/V/L/I-tRNA-synth_anticd-bd Pfam 1189 1329
IPR002303 Valyl-tRNA_ligase NCBIfam 511 1449
IPR033705 Anticodon_Ia_Val CDD 1143 1282
IPR001412 aa-tRNA-synth_I_CS ProSitePatterns 552 563
IPR043502 DNA/RNA_pol_sf SUPERFAMILY 146 445
IPR002300 aa-tRNA-synth_Ia Pfam 524 1143
IPR002303 Valyl-tRNA_ligase PANTHER 482 1464
IPR014729 Rossmann-like_a/b/a_fold Gene3D 841 1068
IPR009008 Val/Leu/Ile-tRNA-synth_edit SUPERFAMILY 718 868
IPR002303 Valyl-tRNA_ligase PRINTS 756 773
IPR002303 Valyl-tRNA_ligase PRINTS 1019 1037
IPR002303 Valyl-tRNA_ligase PRINTS 545 556
IPR002303 Valyl-tRNA_ligase PRINTS 873 886
IPR002303 Valyl-tRNA_ligase PRINTS 988 1009
IPR014729 Rossmann-like_a/b/a_fold Gene3D 512 710
IPR033705 Anticodon_Ia_Val CDD 1143 1282
IPR002303 Valyl-tRNA_ligase PANTHER 430 1469
IPR009080 tRNAsynth_Ia_anticodon-bd SUPERFAMILY 1155 1417
IPR013103 RVT_2 Pfam 146 387
IPR001412 aa-tRNA-synth_I_CS ProSitePatterns 552 563
IPR002300 aa-tRNA-synth_Ia Pfam 524 1144
IPR037118 Val-tRNA_synth_C_sf Gene3D 1395 1466
IPR014729 Rossmann-like_a/b/a_fold Gene3D 841 1068
IPR009008 Val/Leu/Ile-tRNA-synth_edit Gene3D 760 840
IPR002303 Valyl-tRNA_ligase Hamap 511 1467
IPR013155 M/V/L/I-tRNA-synth_anticd-bd Pfam 1189 1329
IPR002303 Valyl-tRNA_ligase TIGRFAM 511 1449
IPR009008 Val/Leu/Ile-tRNA-synth_edit SUPERFAMILY 718 868
IPR043502 DNA/RNA_pol_sf SUPERFAMILY 146 445

No CAZYmes available for this sequence

No external refs found!