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  5. Zm00001d006428_T002

Zm00001d006428_T002


Description : chromatin remodeling 4


Gene families : OG_01_0005048 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005048_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d006428_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d006428_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
MF GO:0140658 ATP-dependent chromatin remodeler activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000330 SNF2_N Pfam 673 962
IPR023780 Chromo_domain Pfam 517 565
IPR023780 Chromo_domain Pfam 581 632
IPR009057 Homeobox-like_sf SUPERFAMILY 1693 1743
IPR014001 Helicase_ATP-bd SMART 666 870
IPR016197 Chromo-like_dom_sf SUPERFAMILY 572 631
IPR001650 Helicase_C Pfam 986 1100
IPR001650 Helicase_C ProSiteProfiles 989 1148
IPR016197 Chromo-like_dom_sf SUPERFAMILY 504 567
IPR009463 DUF1087 Pfam 1271 1318
IPR027417 P-loop_NTPase SUPERFAMILY 640 894
IPR027417 P-loop_NTPase SUPERFAMILY 896 1154
IPR011011 Znf_FYVE_PHD SUPERFAMILY 76 124
IPR019787 Znf_PHD-finger Pfam 78 119
IPR001965 Znf_PHD SMART 77 120
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 78 119
IPR038718 SNF2-like_sf Gene3D 661 903
IPR001650 Helicase_C SMART 1015 1100
IPR000953 Chromo/chromo_shadow_dom SMART 346 568
IPR000953 Chromo/chromo_shadow_dom SMART 578 638
IPR000953 Chromo/chromo_shadow_dom ProSiteProfiles 515 566
IPR001005 SANT/Myb ProSiteProfiles 1689 1741
IPR014001 Helicase_ATP-bd ProSiteProfiles 682 859
IPR019787 Znf_PHD-finger ProSiteProfiles 75 122
IPR027417 P-loop_NTPase Gene3D 904 1131
IPR013083 Znf_RING/FYVE/PHD Gene3D 68 121
IPR009463 DUF1087 SMART 1260 1325
IPR009463 DUF1087 Pfam 1271 1318
IPR014001 Helicase_ATP-bd SMART 666 870
IPR027417 P-loop_NTPase SUPERFAMILY 896 1154
IPR011011 Znf_FYVE_PHD SUPERFAMILY 76 124
IPR019787 Znf_PHD-finger Pfam 78 121
IPR000330 SNF2_N Pfam 686 963
IPR038718 SNF2-like_sf Gene3D 661 903
IPR016197 Chromo-like_dom_sf SUPERFAMILY 572 631
IPR009057 Homeobox-like_sf SUPERFAMILY 1693 1743
IPR000953 Chromo/chromo_shadow_dom ProSiteProfiles 515 566
IPR001965 Znf_PHD SMART 77 120
IPR027417 P-loop_NTPase Gene3D 904 1131
IPR001005 SANT/Myb ProSiteProfiles 1689 1741
IPR001650 Helicase_C SMART 1015 1100
IPR000953 Chromo/chromo_shadow_dom SMART 346 568
IPR000953 Chromo/chromo_shadow_dom SMART 578 638
IPR014001 Helicase_ATP-bd ProSiteProfiles 682 859
IPR009463 DUF1087 SMART 1260 1325
IPR016197 Chromo-like_dom_sf SUPERFAMILY 504 567
IPR001650 Helicase_C ProSiteProfiles 989 1148
IPR001650 Helicase_C Pfam 989 1100
IPR027417 P-loop_NTPase SUPERFAMILY 640 894
IPR013083 Znf_RING/FYVE/PHD Gene3D 68 121
IPR023780 Chromo_domain Pfam 582 631
IPR019787 Znf_PHD-finger ProSiteProfiles 75 122
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 78 119

No CAZYmes available for this sequence

No external refs found!