Zm00001d006548_T001

Description : histone H2A 2

Gene families : OG_01_0001116 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001116_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d006548_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d006548_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_6

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
MF	GO:0046982	protein heterodimerization activity	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002119	Histone_H2A	PRINTS	73	87
IPR002119	Histone_H2A	PRINTS	59	72
IPR002119	Histone_H2A	PRINTS	101	119
IPR002119	Histone_H2A	PRINTS	44	59
IPR002119	Histone_H2A	PRINTS	15	37
IPR002119	Histone_H2A	SMART	4	124
IPR002119	Histone_H2A	PANTHER	12	122
IPR032458	Histone_H2A_CS	ProSitePatterns	23	29
IPR007125	Histone_H2A/H2B/H3	Pfam	14	90
IPR002119	Histone_H2A	CDD	9	119
IPR032454	Histone_H2A_C	Pfam	93	126
IPR009072	Histone-fold	SUPERFAMILY	9	123
IPR009072	Histone-fold	Gene3D	1	129
IPR002119	Histone_H2A	CDD	9	119
IPR032454	Histone_H2A_C	Pfam	93	126
IPR002119	Histone_H2A	SMART	4	124
IPR032458	Histone_H2A_CS	ProSitePatterns	23	29
IPR002119	Histone_H2A	PRINTS	73	87
IPR002119	Histone_H2A	PRINTS	59	72
IPR002119	Histone_H2A	PRINTS	101	119
IPR002119	Histone_H2A	PRINTS	44	59
IPR002119	Histone_H2A	PRINTS	15	37
IPR009072	Histone-fold	SUPERFAMILY	9	123
IPR009072	Histone-fold	Gene3D	1	129
IPR007125	Histone_H2A/H2B/H3	Pfam	14	90
IPR002119	Histone_H2A	PANTHER	2	134

No CAZYmes available for this sequence

External Links

No external refs found!