Zm00001d006871_T001

Description : 40s ribosomal protein SA B

Gene families : OG_01_0001153 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001153_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d006871_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d006871_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_215
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_257

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	ISM	GOs from InterProScan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005707	Ribosomal_uS2_euk/arc	NCBIfam	16	210
IPR018130	Ribosomal_uS2_CS	ProSitePatterns	124	148
IPR005707	Ribosomal_uS2_euk/arc	PANTHER	11	289
IPR023591	Ribosomal_uS2_flav_dom_sf	SUPERFAMILY	17	205
IPR027498	Ribosomal_uS2_euk	Hamap	7	269
IPR001865	Ribosomal_uS2	Pfam	23	117
IPR001865	Ribosomal_uS2	Pfam	122	187
IPR001865	Ribosomal_uS2	PRINTS	162	176
IPR001865	Ribosomal_uS2	PRINTS	141	152
IPR001865	Ribosomal_uS2	PRINTS	20	38
IPR001865	Ribosomal_uS2	PRINTS	124	141
IPR001865	Ribosomal_uS2	PRINTS	99	116
IPR001865	Ribosomal_uS2	PRINTS	50	59
IPR032281	Ribosomal_uS2_C	Pfam	207	307
IPR001865	Ribosomal_uS2	CDD	23	189
IPR001865	Ribosomal_uS2	CDD	23	189
IPR001865	Ribosomal_uS2	Pfam	122	187
IPR001865	Ribosomal_uS2	Pfam	23	116
IPR027498	Ribosomal_uS2_euk	Hamap	7	269
IPR032281	Ribosomal_uS2_C	Pfam	207	306
IPR001865	Ribosomal_uS2	PRINTS	162	176
IPR001865	Ribosomal_uS2	PRINTS	141	152
IPR001865	Ribosomal_uS2	PRINTS	20	38
IPR001865	Ribosomal_uS2	PRINTS	124	141
IPR001865	Ribosomal_uS2	PRINTS	99	116
IPR001865	Ribosomal_uS2	PRINTS	50	59
IPR005707	Ribosomal_uS2_euk/arc	TIGRFAM	16	210
IPR018130	Ribosomal_uS2_CS	ProSitePatterns	124	148
IPR023591	Ribosomal_uS2_flav_dom_sf	SUPERFAMILY	17	205
IPR005707	Ribosomal_uS2_euk/arc	PANTHER	13	292

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d006871_T001

Expression Profile

Co-expression Networks

Functional Annotation