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  5. Zm00001d007043_T003

Zm00001d007043_T003


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0006952 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006952_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d007043_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d007043_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_263


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 520 682
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 391 502
IPR045075 Syf1-like PANTHER 33 821
IPR011990 TPR-like_helical_dom_sf Gene3D 40 208
IPR011990 TPR-like_helical_dom_sf Gene3D 706 769
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 41 96
IPR002885 Pentatricopeptide_rpt Pfam 276 298
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 678 769
IPR011990 TPR-like_helical_dom_sf Gene3D 513 686
IPR011990 TPR-like_helical_dom_sf Gene3D 224 354
IPR011990 TPR-like_helical_dom_sf Gene3D 360 512
IPR003107 HAT SMART 615 649
IPR003107 HAT SMART 687 722
IPR003107 HAT SMART 106 138
IPR003107 HAT SMART 576 610
IPR003107 HAT SMART 140 174
IPR003107 HAT SMART 450 486
IPR003107 HAT SMART 542 574
IPR003107 HAT SMART 64 96
IPR003107 HAT SMART 287 322
IPR003107 HAT SMART 724 757
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 110 245
IPR011990 TPR-like_helical_dom_sf Gene3D 40 208
IPR011990 TPR-like_helical_dom_sf Gene3D 706 769
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 520 682
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 391 502
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 41 96
IPR002885 Pentatricopeptide_rpt Pfam 276 298
IPR011990 TPR-like_helical_dom_sf Gene3D 513 686
IPR011990 TPR-like_helical_dom_sf Gene3D 224 354
IPR011990 TPR-like_helical_dom_sf Gene3D 360 512
IPR045075 Syf1-like PANTHER 32 870
IPR003107 HAT SMART 687 722
IPR003107 HAT SMART 615 649
IPR003107 HAT SMART 106 138
IPR003107 HAT SMART 576 610
IPR003107 HAT SMART 140 174
IPR003107 HAT SMART 450 486
IPR003107 HAT SMART 542 574
IPR003107 HAT SMART 64 96
IPR003107 HAT SMART 287 322
IPR003107 HAT SMART 724 757
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 678 769
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 110 245

No CAZYmes available for this sequence

No external refs found!