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  5. Zm00001d007092_T001

Zm00001d007092_T001


Description : elongation factor Ts family protein


Gene families : OG_01_0007515 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007515_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d007092_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d007092_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_177
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_185


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003746 translation elongation factor activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006414 translational elongation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012340 NA-bd_OB-fold SUPERFAMILY 138 219
IPR001816 Transl_elong_EFTs/EF1B Hamap 782 978
IPR009060 UBA-like_sf SUPERFAMILY 783 834
IPR009060 UBA-like_sf SUPERFAMILY 543 593
IPR012340 NA-bd_OB-fold Gene3D 258 345
IPR014039 Transl_elong_EFTs/EF1B_dimer Pfam 836 977
IPR014039 Transl_elong_EFTs/EF1B_dimer Pfam 591 736
IPR003029 S1_domain SMART 265 335
IPR003029 S1_domain SMART 146 217
IPR036402 EF-Ts_dimer_sf SUPERFAMILY 595 736
IPR018101 Transl_elong_Ts_CS ProSitePatterns 791 806
IPR003029 S1_domain ProSiteProfiles 267 335
IPR001816 Transl_elong_EFTs/EF1B NCBIfam 630 753
IPR001816 Transl_elong_EFTs/EF1B NCBIfam 541 634
IPR001816 Transl_elong_EFTs/EF1B NCBIfam 782 882
IPR012340 NA-bd_OB-fold Gene3D 134 221
IPR036402 EF-Ts_dimer_sf SUPERFAMILY 836 977
IPR018101 Transl_elong_Ts_CS ProSitePatterns 614 624
IPR003029 S1_domain ProSiteProfiles 148 217
IPR012340 NA-bd_OB-fold SUPERFAMILY 262 342
IPR001816 Transl_elong_EFTs/EF1B PANTHER 121 639
IPR018101 Transl_elong_Ts_CS ProSitePatterns 550 565
IPR018101 Transl_elong_Ts_CS ProSitePatterns 855 865
IPR036402 EF-Ts_dimer_sf Gene3D 598 735
IPR036402 EF-Ts_dimer_sf Gene3D 839 976
IPR003029 S1_domain Pfam 148 217
IPR001816 Transl_elong_EFTs/EF1B Hamap 540 753
IPR014039 Transl_elong_EFTs/EF1B_dimer Pfam 594 736
IPR014039 Transl_elong_EFTs/EF1B_dimer Pfam 836 977
IPR012340 NA-bd_OB-fold SUPERFAMILY 262 342
IPR036402 EF-Ts_dimer_sf SUPERFAMILY 836 977
IPR036402 EF-Ts_dimer_sf Gene3D 839 976
IPR009060 UBA-like_sf SUPERFAMILY 543 593
IPR001816 Transl_elong_EFTs/EF1B TIGRFAM 541 634
IPR001816 Transl_elong_EFTs/EF1B TIGRFAM 630 753
IPR001816 Transl_elong_EFTs/EF1B TIGRFAM 782 882
IPR018101 Transl_elong_Ts_CS ProSitePatterns 791 806
IPR036402 EF-Ts_dimer_sf Gene3D 598 735
IPR001816 Transl_elong_EFTs/EF1B Hamap 540 753
IPR003029 S1_domain Pfam 148 217
IPR018101 Transl_elong_Ts_CS ProSitePatterns 550 565
IPR003029 S1_domain ProSiteProfiles 267 335
IPR001816 Transl_elong_EFTs/EF1B PANTHER 302 757
IPR001816 Transl_elong_EFTs/EF1B PANTHER 782 977
IPR001816 Transl_elong_EFTs/EF1B PANTHER 102 285
IPR018101 Transl_elong_Ts_CS ProSitePatterns 614 624
IPR036402 EF-Ts_dimer_sf SUPERFAMILY 595 736
IPR001816 Transl_elong_EFTs/EF1B Hamap 782 978
IPR009060 UBA-like_sf SUPERFAMILY 783 834
IPR018101 Transl_elong_Ts_CS ProSitePatterns 855 865
IPR012340 NA-bd_OB-fold SUPERFAMILY 138 219
IPR003029 S1_domain ProSiteProfiles 148 217

No CAZYmes available for this sequence

No external refs found!