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  5. Zm00001d007117_T001

Zm00001d007117_T001


Description : GTP1/OBG family protein


Gene families : OG_01_0008393 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008393_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d007117_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d007117_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_92
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_371


Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISM GOs from InterProScan
MF GO:0000287 magnesium ion binding ISM GOs from InterProScan
MF GO:0003924 GTPase activity ISM GOs from InterProScan
MF GO:0005525 GTP binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036726 GTP1_OBG_dom_sf SUPERFAMILY 293 439
IPR006074 GTP1-OBG_CS ProSitePatterns 520 533
IPR006073 GTP-bd PRINTS 469 489
IPR006073 GTP-bd PRINTS 535 553
IPR006073 GTP-bd PRINTS 490 508
IPR006073 GTP-bd PRINTS 518 533
IPR006169 GTP1_OBG_dom Pfam 294 439
IPR027417 P-loop_NTPase Gene3D 466 646
IPR006073 GTP-bd Pfam 468 588
IPR045086 OBG_GTPase PANTHER 279 645
IPR031167 G_OBG ProSiteProfiles 467 635
IPR014100 GTP-bd_Obg/CgtA NCBIfam 293 634
IPR036346 GTP-bd_prot_GTP1/OBG_C_sf SUPERFAMILY 670 742
IPR015349 OCT_dom NCBIfam 676 741
IPR036346 GTP-bd_prot_GTP1/OBG_C_sf Gene3D 673 743
IPR027417 P-loop_NTPase SUPERFAMILY 459 643
IPR014100 GTP-bd_Obg/CgtA Hamap 291 635
IPR031167 G_OBG CDD 467 634
IPR036726 GTP1_OBG_dom_sf Gene3D 288 444
IPR006169 GTP1_OBG_dom ProSiteProfiles 290 448
IPR015349 OCT_dom Pfam 671 740
IPR015349 OCT_dom ProSiteProfiles 660 742
IPR006073 GTP-bd PRINTS 469 489
IPR006073 GTP-bd PRINTS 535 553
IPR006073 GTP-bd PRINTS 490 508
IPR006073 GTP-bd PRINTS 518 533
IPR045086 OBG_GTPase PANTHER 265 715
IPR006169 GTP1_OBG_dom ProSiteProfiles 290 448
IPR027417 P-loop_NTPase SUPERFAMILY 459 643
IPR031167 G_OBG CDD 467 634
IPR036726 GTP1_OBG_dom_sf Gene3D 288 444
IPR006169 GTP1_OBG_dom Pfam 294 439
IPR027417 P-loop_NTPase Gene3D 466 646
IPR031167 G_OBG ProSiteProfiles 467 635
IPR036726 GTP1_OBG_dom_sf SUPERFAMILY 293 439
IPR015349 OCT_dom TIGRFAM 676 741
IPR014100 GTP-bd_Obg/CgtA Hamap 291 635
IPR006073 GTP-bd Pfam 468 588
IPR015349 OCT_dom Pfam 671 740
IPR006074 GTP1-OBG_CS ProSitePatterns 520 533
IPR015349 OCT_dom ProSiteProfiles 660 742
IPR036346 GTP-bd_prot_GTP1/OBG_C_sf SUPERFAMILY 670 742
IPR014100 GTP-bd_Obg/CgtA TIGRFAM 293 634
IPR036346 GTP-bd_prot_GTP1/OBG_C_sf Gene3D 673 743

No CAZYmes available for this sequence

No external refs found!