Zm00001d007567_T001

Description : histone H2A 11

Gene families : OG_01_0005476 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005476_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d007567_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d007567_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_254
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_35

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
MF	GO:0046982	protein heterodimerization activity	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR009072	Histone-fold	SUPERFAMILY	18	111
IPR002119	Histone_H2A	SMART	14	132
IPR009072	Histone-fold	Gene3D	16	132
IPR002119	Histone_H2A	PRINTS	25	47
IPR002119	Histone_H2A	PRINTS	84	98
IPR002119	Histone_H2A	PRINTS	70	83
IPR002119	Histone_H2A	PRINTS	55	70
IPR002119	Histone_H2A	PRINTS	111	129
IPR007125	Histone_H2A/H2B/H3	Pfam	19	102
IPR002119	Histone_H2A	PANTHER	21	130
IPR032458	Histone_H2A_CS	ProSitePatterns	33	39
IPR032454	Histone_H2A_C	Pfam	104	130
IPR009072	Histone-fold	Gene3D	16	132
IPR002119	Histone_H2A	PANTHER	2	132
IPR007125	Histone_H2A/H2B/H3	Pfam	20	103
IPR032458	Histone_H2A_CS	ProSitePatterns	33	39
IPR009072	Histone-fold	SUPERFAMILY	18	111
IPR002119	Histone_H2A	SMART	14	132
IPR032454	Histone_H2A_C	Pfam	104	130
IPR002119	Histone_H2A	PRINTS	25	47
IPR002119	Histone_H2A	PRINTS	84	98
IPR002119	Histone_H2A	PRINTS	70	83
IPR002119	Histone_H2A	PRINTS	55	70
IPR002119	Histone_H2A	PRINTS	111	129

No CAZYmes available for this sequence

External Links

No external refs found!