Zm00001d007632_T003

Description : U2 snRNP auxilliary factor, large subunit, splicing factor

Gene families : OG_01_0000156 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000156_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d007632_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d007632_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_251
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_191

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006529	U2AF_lg	NCBIfam	67	533
IPR000504	RRM_dom	ProSiteProfiles	385	463
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	260	359
IPR035979	RBD_domain_sf	SUPERFAMILY	386	620
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	494	542
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	553	629
IPR000504	RRM_dom	ProSiteProfiles	265	348
IPR035979	RBD_domain_sf	SUPERFAMILY	247	351
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	360	475
IPR000504	RRM_dom	SMART	386	459
IPR000504	RRM_dom	SMART	266	344
IPR000504	RRM_dom	Pfam	387	456
IPR000504	RRM_dom	Pfam	387	456
IPR000504	RRM_dom	ProSiteProfiles	265	348
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	260	359
IPR035979	RBD_domain_sf	SUPERFAMILY	386	620
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	360	475
IPR006529	U2AF_lg	TIGRFAM	67	533
IPR035979	RBD_domain_sf	SUPERFAMILY	247	351
IPR000504	RRM_dom	ProSiteProfiles	385	463
IPR000504	RRM_dom	SMART	386	459
IPR000504	RRM_dom	SMART	266	344
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	494	542
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	553	629

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d007632_T003

Expression Profile

Co-expression Networks

Functional Annotation