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  5. Zm00001d007799_T001

Zm00001d007799_T001


Description : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain


Gene families : OG_01_0007370 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007370_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d007799_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d007799_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_203
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_93


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036875 Znf_CCHC_sf SUPERFAMILY 207 228
IPR001878 Znf_CCHC SMART 209 225
IPR000504 RRM_dom Pfam 9 37
IPR000504 RRM_dom Pfam 103 146
IPR035979 RBD_domain_sf SUPERFAMILY 6 60
IPR035979 RBD_domain_sf SUPERFAMILY 101 182
IPR001878 Znf_CCHC ProSiteProfiles 210 224
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 1 185
IPR001878 Znf_CCHC Pfam 209 224
IPR000504 RRM_dom ProSiteProfiles 7 153
IPR000504 RRM_dom SMART 8 149
IPR001878 Znf_CCHC Pfam 209 224
IPR000504 RRM_dom Pfam 103 146
IPR000504 RRM_dom ProSiteProfiles 7 153
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 1 185
IPR036875 Znf_CCHC_sf SUPERFAMILY 207 228
IPR035979 RBD_domain_sf SUPERFAMILY 6 60
IPR001878 Znf_CCHC SMART 209 225
IPR001878 Znf_CCHC ProSiteProfiles 210 224
IPR035979 RBD_domain_sf SUPERFAMILY 101 182
IPR000504 RRM_dom SMART 8 149

No CAZYmes available for this sequence

No external refs found!