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  5. Zm00001d007900_T003

Zm00001d007900_T003


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0001503 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001503_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d007900_T003 No neighbors in network
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d007900_T003
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_127


Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005737 cytoplasm ISM GOs from InterProScan
CC GO:0005852 eukaryotic translation initiation factor 3 complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 284 314
IPR019775 WD40_repeat_CS ProSitePatterns 67 81
IPR001680 WD40_rpt SMART 1 38
IPR001680 WD40_rpt SMART 135 174
IPR001680 WD40_rpt SMART 222 262
IPR001680 WD40_rpt SMART 41 80
IPR001680 WD40_rpt SMART 177 219
IPR001680 WD40_rpt SMART 277 316
IPR001680 WD40_rpt ProSiteProfiles 187 228
IPR020472 G-protein_beta_WD-40_rep PRINTS 67 81
IPR020472 G-protein_beta_WD-40_rep PRINTS 206 220
IPR020472 G-protein_beta_WD-40_rep PRINTS 161 175
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 1 326
IPR001680 WD40_rpt ProSiteProfiles 6 47
IPR019775 WD40_repeat_CS ProSitePatterns 161 175
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 4 314
IPR001680 WD40_rpt ProSiteProfiles 48 89
IPR027525 eIF3i Hamap 1 326
IPR001680 WD40_rpt ProSiteProfiles 142 183
IPR001680 WD40_rpt Pfam 188 219
IPR001680 WD40_rpt Pfam 283 314
IPR001680 WD40_rpt Pfam 145 174
IPR001680 WD40_rpt Pfam 6 37
IPR001680 WD40_rpt Pfam 43 79
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 1 326
IPR001680 WD40_rpt ProSiteProfiles 142 183
IPR001680 WD40_rpt ProSiteProfiles 48 89
IPR001680 WD40_rpt ProSiteProfiles 6 47
IPR001680 WD40_rpt Pfam 188 219
IPR001680 WD40_rpt Pfam 283 314
IPR001680 WD40_rpt Pfam 43 79
IPR001680 WD40_rpt Pfam 145 174
IPR001680 WD40_rpt SMART 1 38
IPR001680 WD40_rpt SMART 135 174
IPR001680 WD40_rpt SMART 222 262
IPR001680 WD40_rpt SMART 41 80
IPR001680 WD40_rpt SMART 177 219
IPR001680 WD40_rpt SMART 277 316
IPR019775 WD40_repeat_CS ProSitePatterns 67 81
IPR020472 G-protein_beta_WD-40_rep PRINTS 67 81
IPR020472 G-protein_beta_WD-40_rep PRINTS 206 220
IPR020472 G-protein_beta_WD-40_rep PRINTS 161 175
IPR019775 WD40_repeat_CS ProSitePatterns 161 175
IPR027525 eIF3i Hamap 1 326
IPR001680 WD40_rpt ProSiteProfiles 187 228
IPR001680 WD40_rpt ProSiteProfiles 284 314
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 4 314

No CAZYmes available for this sequence

No external refs found!