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  5. Zm00001d007902_T001

Zm00001d007902_T001


Description : syntaxin of plants 131


Gene families : OG_01_0001180 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001180_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d007902_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d007902_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_222
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_173


Type GO Term Name Evidence Source
MF GO:0005484 SNAP receptor activity ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000727 T_SNARE_dom Pfam 241 293
IPR006011 Syntaxin_N Pfam 37 240
IPR000727 T_SNARE_dom ProSiteProfiles 205 267
IPR006012 Syntaxin/epimorphin_CS ProSitePatterns 211 250
IPR010989 SNARE SUPERFAMILY 34 260
IPR006011 Syntaxin_N SMART 30 156
IPR006011 Syntaxin_N CDD 35 192
IPR000727 T_SNARE_dom SMART 200 267
IPR045242 Syntaxin PANTHER 38 287
IPR010989 SNARE SUPERFAMILY 34 260
IPR006011 Syntaxin_N SMART 30 156
IPR000727 T_SNARE_dom Pfam 242 293
IPR006012 Syntaxin/epimorphin_CS ProSitePatterns 211 250
IPR000727 T_SNARE_dom SMART 200 267
IPR000727 T_SNARE_dom ProSiteProfiles 205 267
IPR006011 Syntaxin_N CDD 35 192
IPR006011 Syntaxin_N Pfam 37 240
IPR045242 Syntaxin PANTHER 4 297

No CAZYmes available for this sequence

No external refs found!