Zm00001d007905_T001

Description : ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases

Gene families : OG_01_0002650 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002650_tree

Sequence : cds (download), rna (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d007905_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d007905_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_4
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0002161	aminoacyl-tRNA editing activity	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0004832	valine-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	ISM	GOs from InterProScan
BP	GO:0006438	valyl-tRNA aminoacylation	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR037118	Val-tRNA_synth_C_sf	Gene3D	889	960
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	66	259
IPR033705	Anticodon_Ia_Val	CDD	631	779
IPR001412	aa-tRNA-synth_I_CS	ProSitePatterns	102	113
IPR010978	tRNA-bd_arm	SUPERFAMILY	896	960
IPR009008	Val/Leu/Ile-tRNA-synth_edit	Gene3D	260	303
IPR019499	Val-tRNA_synth_tRNA-bd	Pfam	896	960
IPR002303	Valyl-tRNA_ligase	PANTHER	53	956
IPR002303	Valyl-tRNA_ligase	Hamap	62	961
IPR009008	Val/Leu/Ile-tRNA-synth_edit	SUPERFAMILY	250	403
IPR002303	Valyl-tRNA_ligase	PRINTS	95	106
IPR002303	Valyl-tRNA_ligase	PRINTS	513	534
IPR002303	Valyl-tRNA_ligase	PRINTS	407	420
IPR002303	Valyl-tRNA_ligase	PRINTS	545	563
IPR002303	Valyl-tRNA_ligase	PRINTS	291	308
IPR002300	aa-tRNA-synth_Ia	Pfam	73	632
IPR009080	tRNAsynth_Ia_anticodon-bd	SUPERFAMILY	644	911
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	350	589
IPR002303	Valyl-tRNA_ligase	NCBIfam	64	942
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	Pfam	689	832
IPR002303	Valyl-tRNA_ligase	PANTHER	61	963
IPR001412	aa-tRNA-synth_I_CS	ProSitePatterns	102	113
IPR033705	Anticodon_Ia_Val	CDD	631	779
IPR037118	Val-tRNA_synth_C_sf	Gene3D	889	960
IPR009008	Val/Leu/Ile-tRNA-synth_edit	SUPERFAMILY	250	403
IPR002300	aa-tRNA-synth_Ia	Pfam	73	632
IPR002303	Valyl-tRNA_ligase	PRINTS	95	106
IPR002303	Valyl-tRNA_ligase	PRINTS	513	534
IPR002303	Valyl-tRNA_ligase	PRINTS	407	420
IPR002303	Valyl-tRNA_ligase	PRINTS	545	563
IPR002303	Valyl-tRNA_ligase	PRINTS	291	308
IPR019499	Val-tRNA_synth_tRNA-bd	Pfam	896	960
IPR010978	tRNA-bd_arm	SUPERFAMILY	896	960
IPR009080	tRNAsynth_Ia_anticodon-bd	SUPERFAMILY	644	911
IPR002303	Valyl-tRNA_ligase	TIGRFAM	64	942
IPR009008	Val/Leu/Ile-tRNA-synth_edit	Gene3D	260	303
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	350	589
IPR002303	Valyl-tRNA_ligase	Hamap	62	961
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	Pfam	689	831
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	66	259

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d007905_T001

Expression Profile

Co-expression Networks

Functional Annotation