Zm00001d008291_T001

Description : LA RNA-binding protein

Gene families : OG_01_0002602 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002602_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d008291_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_26

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	ISM	GOs from InterProScan

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002344	Lupus_La	PRINTS	336	353
IPR002344	Lupus_La	PRINTS	391	404
IPR045180	La_dom_prot	PANTHER	67	439
IPR006630	La_HTH	Pfam	333	388
IPR036388	WH-like_DNA-bd_sf	Gene3D	322	412
IPR006630	La_HTH	SMART	327	403
IPR006630	La_HTH	ProSiteProfiles	323	412
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	322	411
IPR006630	La_HTH	SMART	327	403
IPR002344	Lupus_La	PRINTS	336	353
IPR002344	Lupus_La	PRINTS	391	404
IPR006630	La_HTH	Pfam	333	388
IPR045180	La_dom_prot	PANTHER	22	563
IPR036388	WH-like_DNA-bd_sf	Gene3D	322	412
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	322	411
IPR006630	La_HTH	ProSiteProfiles	323	412

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d008291_T001

Expression Profile

Co-expression Networks

Functional Annotation