Zm00001d008497_T002

Description : tRNA synthetase class I (I, L, M and V) family protein

Gene families : OG_01_0002163 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002163_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d008497_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d008497_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_192
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_11

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0002161	aminoacyl-tRNA editing activity	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0004823	leucine-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	ISM	GOs from InterProScan
BP	GO:0006429	leucyl-tRNA aminoacylation	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002302	Leu-tRNA-ligase	Hamap	66	978
IPR001412	aa-tRNA-synth_I_CS	ProSitePatterns	111	121
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	469	687
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	99	395
IPR009080	tRNAsynth_Ia_anticodon-bd	SUPERFAMILY	788	979
IPR002302	Leu-tRNA-ligase	NCBIfam	232	978
IPR002302	Leu-tRNA-ligase	PANTHER	50	978
IPR009008	Val/Leu/Ile-tRNA-synth_edit	SUPERFAMILY	316	523
IPR025709	Leu_tRNA-synth_edit	Pfam	314	507
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	Pfam	829	937
IPR002302	Leu-tRNA-ligase	PRINTS	279	292
IPR002302	Leu-tRNA-ligase	PRINTS	308	327
IPR002302	Leu-tRNA-ligase	PRINTS	634	656
IPR002302	Leu-tRNA-ligase	PRINTS	247	263
IPR002302	Leu-tRNA-ligase	PRINTS	195	212
IPR002302	Leu-tRNA-ligase	PRINTS	595	613
IPR002302	Leu-tRNA-ligase	PRINTS	667	677
IPR002300	aa-tRNA-synth_Ia	Pfam	742	773
IPR025709	Leu_tRNA-synth_edit	Pfam	314	507
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	Pfam	829	937
IPR002302	Leu-tRNA-ligase	TIGRFAM	232	978
IPR009080	tRNAsynth_Ia_anticodon-bd	SUPERFAMILY	788	979
IPR002300	aa-tRNA-synth_Ia	Pfam	743	773
IPR002300	aa-tRNA-synth_Ia	Pfam	76	225
IPR009008	Val/Leu/Ile-tRNA-synth_edit	SUPERFAMILY	316	523
IPR002302	Leu-tRNA-ligase	PANTHER	48	978
IPR002302	Leu-tRNA-ligase	PRINTS	279	292
IPR002302	Leu-tRNA-ligase	PRINTS	308	327
IPR002302	Leu-tRNA-ligase	PRINTS	634	656
IPR002302	Leu-tRNA-ligase	PRINTS	247	263
IPR002302	Leu-tRNA-ligase	PRINTS	195	212
IPR002302	Leu-tRNA-ligase	PRINTS	595	613
IPR002302	Leu-tRNA-ligase	PRINTS	667	677
IPR002302	Leu-tRNA-ligase	Hamap	66	978
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	469	687
IPR014729	Rossmann-like_a/b/a_fold	Gene3D	99	395
IPR001412	aa-tRNA-synth_I_CS	ProSitePatterns	111	121

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d008497_T002

Expression Profile

Co-expression Networks

Functional Annotation