Zm00001d008777_T008

Description : RNA helicase, ATP-dependent, SK12/DOB1 protein

Gene families : OG_01_0002761 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002761_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d008777_T008
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d008777_T008
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_235

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003724	RNA helicase activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008186	ATP-dependent activity, acting on RNA	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012961	Ski2/MTR4_C	Pfam	831	1001
IPR014001	Helicase_ATP-bd	SMART	81	264
IPR027417	P-loop_NTPase	Gene3D	258	516
IPR018247	EF_Hand_1_Ca_BS	ProSitePatterns	459	471
IPR014001	Helicase_ATP-bd	ProSiteProfiles	93	249
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	87	235
IPR027417	P-loop_NTPase	Gene3D	45	257
IPR048392	MTR4-like_stalk	Pfam	540	602
IPR001650	Helicase_C	SMART	393	482
IPR025696	MTR4_beta-barrel	Pfam	605	804
IPR001650	Helicase_C	Pfam	402	482
IPR012961	Ski2/MTR4_C	SMART	828	1006
IPR016438	SKI2-like	PIRSF	1	1006
IPR001650	Helicase_C	ProSiteProfiles	327	530
IPR027417	P-loop_NTPase	SUPERFAMILY	96	496
IPR012961	Ski2/MTR4_C	SMART	828	1006
IPR016438	SKI2-like	PIRSF	1	1006
IPR018247	EF_Hand_1_Ca_BS	ProSitePatterns	459	471
IPR012961	Ski2/MTR4_C	Pfam	831	1000
IPR014001	Helicase_ATP-bd	SMART	81	264
IPR001650	Helicase_C	ProSiteProfiles	327	530
IPR014001	Helicase_ATP-bd	ProSiteProfiles	93	249
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	87	233
IPR027417	P-loop_NTPase	Gene3D	258	516
IPR001650	Helicase_C	Pfam	376	482
IPR025696	MTR4_beta-barrel	Pfam	540	804
IPR027417	P-loop_NTPase	Gene3D	45	257
IPR001650	Helicase_C	SMART	393	482
IPR027417	P-loop_NTPase	SUPERFAMILY	96	496

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d008777_T008

Expression Profile

Co-expression Networks

Functional Annotation