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  5. Zm00001d008847_T001

Zm00001d008847_T001


Description : high mobility group


Gene families : OG_01_0003538 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003538_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d008847_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d008847_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_173


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000969 SSRP1/POB3 PRINTS 240 256
IPR000969 SSRP1/POB3 PRINTS 355 373
IPR000969 SSRP1/POB3 PRINTS 373 390
IPR000969 SSRP1/POB3 PRINTS 328 341
IPR000969 SSRP1/POB3 PRINTS 263 279
IPR000969 SSRP1/POB3 PRINTS 218 234
IPR000969 SSRP1/POB3 PRINTS 417 435
IPR036910 HMG_box_dom_sf SUPERFAMILY 544 625
IPR048993 SSRP1-like_PH1 Pfam 208 335
IPR009071 HMG_box_dom Pfam 557 625
IPR035417 SSRP1/POB3_N Pfam 6 98
IPR036910 HMG_box_dom_sf Gene3D 541 634
IPR013719 RTT106/SPT16-like_middle_dom Pfam 348 441
IPR013719 RTT106/SPT16-like_middle_dom SMART 347 442
IPR024954 SSRP1_DD Pfam 106 174
IPR009071 HMG_box_dom SMART 556 626
IPR011993 PH-like_dom_sf Gene3D 338 447
IPR009071 HMG_box_dom ProSiteProfiles 557 625
IPR011993 PH-like_dom_sf Gene3D 1 93
IPR038167 SSRP1_sf Gene3D 97 179
IPR009071 HMG_box_dom Pfam 557 624
IPR024954 SSRP1_DD Pfam 106 174
IPR009071 HMG_box_dom SMART 556 626
IPR035417 SSRP1/POB3_N Pfam 6 98
IPR036910 HMG_box_dom_sf Gene3D 541 634
IPR011993 PH-like_dom_sf Gene3D 338 447
IPR009071 HMG_box_dom ProSiteProfiles 557 625
IPR000969 SSRP1/POB3 PRINTS 240 256
IPR000969 SSRP1/POB3 PRINTS 355 373
IPR000969 SSRP1/POB3 PRINTS 373 390
IPR000969 SSRP1/POB3 PRINTS 328 341
IPR000969 SSRP1/POB3 PRINTS 263 279
IPR000969 SSRP1/POB3 PRINTS 218 234
IPR000969 SSRP1/POB3 PRINTS 417 435
IPR011993 PH-like_dom_sf Gene3D 1 93
IPR013719 RTT106/SPT16-like_middle_dom Pfam 349 440
IPR038167 SSRP1_sf Gene3D 97 179
IPR036910 HMG_box_dom_sf SUPERFAMILY 544 625
IPR013719 RTT106/SPT16-like_middle_dom SMART 347 442

No CAZYmes available for this sequence

No external refs found!