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  5. Zm00001d008930_T003

Zm00001d008930_T003


Description : tetratricopetide-repeat thioredoxin-like 3


Gene families : OG_01_0004048 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004048_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d008930_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d008930_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_252
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_122


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036249 Thioredoxin-like_sf SUPERFAMILY 479 674
IPR011990 TPR-like_helical_dom_sf Gene3D 201 561
IPR013766 Thioredoxin_domain Pfam 589 661
IPR001440 TPR_1 Pfam 477 508
IPR019734 TPR_repeat ProSiteProfiles 203 236
IPR019734 TPR_repeat SMART 347 380
IPR019734 TPR_repeat SMART 475 508
IPR019734 TPR_repeat SMART 395 428
IPR019734 TPR_repeat SMART 509 542
IPR019734 TPR_repeat SMART 237 270
IPR019734 TPR_repeat SMART 441 474
IPR019734 TPR_repeat SMART 203 236
IPR019734 TPR_repeat SMART 271 304
IPR044534 TTL1-4 PANTHER 38 667
IPR013105 TPR_2 Pfam 204 236
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 202 431
IPR019734 TPR_repeat ProSiteProfiles 203 236
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 202 431
IPR013105 TPR_2 Pfam 204 236
IPR011990 TPR-like_helical_dom_sf Gene3D 201 561
IPR001440 TPR_1 Pfam 477 508
IPR013766 Thioredoxin_domain Pfam 589 661
IPR044534 TTL1-4 PANTHER 5 674
IPR036249 Thioredoxin-like_sf SUPERFAMILY 479 674
IPR019734 TPR_repeat SMART 347 380
IPR019734 TPR_repeat SMART 475 508
IPR019734 TPR_repeat SMART 509 542
IPR019734 TPR_repeat SMART 395 428
IPR019734 TPR_repeat SMART 237 270
IPR019734 TPR_repeat SMART 441 474
IPR019734 TPR_repeat SMART 271 304
IPR019734 TPR_repeat SMART 203 236

No CAZYmes available for this sequence

No external refs found!