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  5. Zm00001d009003_T001

Zm00001d009003_T001


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0039804 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0039804_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d009003_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d009003_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_27
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_92


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 287 449
IPR045182 JINGUBANG-like PANTHER 69 447
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 94 286
IPR020472 G-protein_beta_WD-40_rep PRINTS 372 386
IPR020472 G-protein_beta_WD-40_rep PRINTS 269 283
IPR020472 G-protein_beta_WD-40_rep PRINTS 227 241
IPR001680 WD40_rpt ProSiteProfiles 208 249
IPR001680 WD40_rpt ProSiteProfiles 250 281
IPR001680 WD40_rpt SMART 196 240
IPR001680 WD40_rpt SMART 96 133
IPR001680 WD40_rpt SMART 399 445
IPR001680 WD40_rpt SMART 289 339
IPR001680 WD40_rpt SMART 346 385
IPR001680 WD40_rpt SMART 243 282
IPR001680 WD40_rpt Pfam 244 281
IPR001680 WD40_rpt Pfam 210 239
IPR001680 WD40_rpt Pfam 401 444
IPR001680 WD40_rpt Pfam 350 384
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 99 444
IPR001680 WD40_rpt ProSiteProfiles 353 384
IPR045182 JINGUBANG-like PANTHER 2 514
IPR001680 WD40_rpt ProSiteProfiles 250 281
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 287 449
IPR001680 WD40_rpt ProSiteProfiles 208 249
IPR001680 WD40_rpt Pfam 349 384
IPR001680 WD40_rpt Pfam 244 281
IPR001680 WD40_rpt Pfam 401 444
IPR001680 WD40_rpt ProSiteProfiles 353 384
IPR020472 G-protein_beta_WD-40_rep PRINTS 372 386
IPR020472 G-protein_beta_WD-40_rep PRINTS 269 283
IPR020472 G-protein_beta_WD-40_rep PRINTS 227 241
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 94 286
IPR001680 WD40_rpt SMART 196 240
IPR001680 WD40_rpt SMART 96 133
IPR001680 WD40_rpt SMART 399 445
IPR001680 WD40_rpt SMART 289 339
IPR001680 WD40_rpt SMART 346 385
IPR001680 WD40_rpt SMART 243 282
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 99 444

No CAZYmes available for this sequence

No external refs found!