Zm00001d009004_T002

Description : tRNAse Z4

Gene families : OG_01_0002556 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002556_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d009004_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d009004_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_185

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004540	RNA nuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	ISM	GOs from InterProScan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042779	obsolete tRNA 3'-trailer cleavage	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036866	RibonucZ/Hydroxyglut_hydro	Gene3D	648	967
IPR036866	RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	112	343
IPR013471	RNase_Z/BN	Hamap	648	963
IPR036866	RibonucZ/Hydroxyglut_hydro	Gene3D	111	373
IPR047151	RNZ2-like	PANTHER	106	989
IPR027794	tRNase_Z_dom	Pfam	118	174
IPR036866	RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	648	962
IPR027794	tRNase_Z_dom	Pfam	118	174
IPR036866	RibonucZ/Hydroxyglut_hydro	Gene3D	648	967
IPR036866	RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	648	962
IPR036866	RibonucZ/Hydroxyglut_hydro	Gene3D	111	373
IPR013471	RNase_Z/BN	Hamap	648	963
IPR036866	RibonucZ/Hydroxyglut_hydro	SUPERFAMILY	112	343

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d009004_T002

Expression Profile

Co-expression Networks

Functional Annotation