Zm00001d009424_T005

Description : Cyclin/Brf1-like TBP-binding protein

Gene families : OG_01_0001642 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001642_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d009424_T005
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d009424_T005
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_105

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0017025	TBP-class protein binding	ISM	GOs from InterProScan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0070897	transcription preinitiation complex assembly	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140296	general transcription initiation factor binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000812	TFIIB	PANTHER	75	412
IPR013150	TFIIB_cyclin	Pfam	158	216
IPR013150	TFIIB_cyclin	Pfam	256	334
IPR036915	Cyclin-like_sf	SUPERFAMILY	150	220
IPR011665	BRF1_TBP-bd_dom	Pfam	494	527
IPR011665	BRF1_TBP-bd_dom	Pfam	600	647
IPR036915	Cyclin-like_sf	SUPERFAMILY	231	337
IPR013763	Cyclin-like_dom	SMART	236	334
IPR013763	Cyclin-like_dom	SMART	151	218
IPR036915	Cyclin-like_sf	SUPERFAMILY	150	220
IPR013763	Cyclin-like_dom	CDD	160	205
IPR000812	TFIIB	PANTHER	75	529
IPR000812	TFIIB	PANTHER	570	661
IPR011665	BRF1_TBP-bd_dom	Pfam	494	647
IPR013150	TFIIB_cyclin	Pfam	230	334
IPR013150	TFIIB_cyclin	Pfam	158	216
IPR013763	Cyclin-like_dom	CDD	233	323
IPR036915	Cyclin-like_sf	SUPERFAMILY	231	337
IPR013763	Cyclin-like_dom	SMART	236	334
IPR013763	Cyclin-like_dom	SMART	151	218

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d009424_T005

Expression Profile

Co-expression Networks

Functional Annotation