Zm00001d009831_T001

Description : PIF1 helicase

Gene families : OG_01_0021891 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0021891_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d009831_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d009831_T001	No neighbors in network
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_88

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027417	P-loop_NTPase	Gene3D	586	733
IPR010285	DNA_helicase_pif1-like	Pfam	614	695
IPR027417	P-loop_NTPase	SUPERFAMILY	709	977
IPR049163	Pif1-like_2B_dom	Pfam	841	887
IPR027417	P-loop_NTPase	SUPERFAMILY	610	676
IPR027417	P-loop_NTPase	Gene3D	924	983
IPR025476	Helitron_helicase-like	Pfam	83	244
IPR010285	DNA_helicase_pif1-like	Pfam	614	695
IPR010285	DNA_helicase_pif1-like	Pfam	699	886
IPR025476	Helitron_helicase-like	Pfam	84	244
IPR027417	P-loop_NTPase	Gene3D	586	733
IPR027417	P-loop_NTPase	SUPERFAMILY	709	977
IPR027417	P-loop_NTPase	SUPERFAMILY	610	676
IPR027417	P-loop_NTPase	Gene3D	924	983

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d009831_T001

Expression Profile

Co-expression Networks

Functional Annotation