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  5. Zm00001d010173_T003

Zm00001d010173_T003


Description : polypyrimidine tract-binding protein 3


Gene families : OG_01_0014450 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014450_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d010173_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d010173_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_264


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006397 mRNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 185 284
IPR000504 RRM_dom Pfam 495 559
IPR021790 PTBP1-like_RRM2 Pfam 179 263
IPR035979 RBD_domain_sf SUPERFAMILY 87 176
IPR034795 PTBPH3_RRM1 CDD 91 165
IPR000504 RRM_dom ProSiteProfiles 91 165
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 82 184
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 476 568
IPR000504 RRM_dom ProSiteProfiles 381 455
IPR034797 PTBPH3_RRM3 CDD 380 455
IPR006536 HnRNP-L/PTB NCBIfam 89 565
IPR000504 RRM_dom SMART 492 561
IPR000504 RRM_dom SMART 382 451
IPR000504 RRM_dom SMART 190 259
IPR000504 RRM_dom SMART 92 161
IPR035979 RBD_domain_sf SUPERFAMILY 380 564
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 186 280
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 374 474
IPR000504 RRM_dom ProSiteProfiles 491 565
IPR000504 RRM_dom Pfam 495 559
IPR000504 RRM_dom ProSiteProfiles 491 565
IPR035979 RBD_domain_sf SUPERFAMILY 380 564
IPR021790 PTBP1-like_RRM2 Pfam 179 263
IPR006536 HnRNP-L/PTB TIGRFAM 89 565
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 374 474
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 186 280
IPR000504 RRM_dom ProSiteProfiles 91 165
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 82 184
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 476 568
IPR035979 RBD_domain_sf SUPERFAMILY 87 176
IPR035979 RBD_domain_sf SUPERFAMILY 185 284
IPR000504 RRM_dom ProSiteProfiles 381 455
IPR000504 RRM_dom SMART 382 451
IPR000504 RRM_dom SMART 492 561
IPR000504 RRM_dom SMART 190 259
IPR000504 RRM_dom SMART 92 161

No CAZYmes available for this sequence

No external refs found!