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  5. Zm00001d010646_T001

Zm00001d010646_T001


Description : SU(VAR)3-9 homolog 3


Gene families : OG_01_0007760 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007760_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d010646_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d010646_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_151
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_251


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
BP GO:0016571 histone methylation ISM GOs from InterProScan
MF GO:0018024 obsolete histone lysine N-methyltransferase activity ISM GOs from InterProScan
BP GO:0034968 histone lysine methylation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001214 SET_dom Pfam 491 624
IPR007728 Pre-SET_dom Pfam 374 472
IPR003105 SRA_YDG Pfam 192 345
IPR001214 SET_dom SMART 480 630
IPR007728 Pre-SET_dom SMART 370 464
IPR003105 SRA_YDG ProSiteProfiles 194 341
IPR046341 SET_dom_sf SUPERFAMILY 355 625
IPR015947 PUA-like_sf SUPERFAMILY 176 362
IPR001214 SET_dom ProSiteProfiles 480 624
IPR036987 SRA-YDG_sf Gene3D 177 358
IPR003105 SRA_YDG SMART 189 345
IPR007728 Pre-SET_dom ProSiteProfiles 416 477
IPR003616 Post-SET_dom ProSiteProfiles 637 650
IPR046341 SET_dom_sf Gene3D 363 652
IPR025794 H3-K9-MeTrfase_plant ProSiteProfiles 58 652
IPR003105 SRA_YDG ProSiteProfiles 194 341
IPR001214 SET_dom Pfam 491 624
IPR036987 SRA-YDG_sf Gene3D 177 358
IPR007728 Pre-SET_dom ProSiteProfiles 416 477
IPR001214 SET_dom SMART 480 630
IPR001214 SET_dom ProSiteProfiles 480 624
IPR003105 SRA_YDG Pfam 193 345
IPR007728 Pre-SET_dom Pfam 374 472
IPR025794 H3-K9-MeTrfase_plant ProSiteProfiles 58 652
IPR003616 Post-SET_dom ProSiteProfiles 637 650
IPR003105 SRA_YDG SMART 189 345
IPR007728 Pre-SET_dom SMART 370 464
IPR015947 PUA-like_sf SUPERFAMILY 176 362

No CAZYmes available for this sequence

No external refs found!