Zm00001d011181_T001

Description : elongation factor Ts family protein

Gene families : OG_01_0007515 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007515_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d011181_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d011181_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_21
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_86

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003746	translation elongation factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006414	translational elongation	ISM	GOs from InterProScan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR018101	Transl_elong_Ts_CS	ProSitePatterns	103	113
IPR000095	CRIB_dom	Pfam	24	57
IPR001816	Transl_elong_EFTs/EF1B	Hamap	90	237
IPR036402	EF-Ts_dimer_sf	SUPERFAMILY	94	225
IPR014039	Transl_elong_EFTs/EF1B_dimer	Pfam	87	225
IPR000095	CRIB_dom	SMART	25	57
IPR001816	Transl_elong_EFTs/EF1B	NCBIfam	87	237
IPR036402	EF-Ts_dimer_sf	Gene3D	90	224
IPR000095	CRIB_dom	ProSiteProfiles	25	38
IPR001816	Transl_elong_EFTs/EF1B	PANTHER	87	237
IPR036936	CRIB_dom_sf	Gene3D	19	62
IPR014039	Transl_elong_EFTs/EF1B_dimer	Pfam	88	225
IPR036402	EF-Ts_dimer_sf	SUPERFAMILY	94	225
IPR000095	CRIB_dom	SMART	25	57
IPR036936	CRIB_dom_sf	Gene3D	19	62
IPR000095	CRIB_dom	ProSiteProfiles	25	38
IPR000095	CRIB_dom	Pfam	24	57
IPR001816	Transl_elong_EFTs/EF1B	Hamap	90	237
IPR001816	Transl_elong_EFTs/EF1B	TIGRFAM	87	237
IPR001816	Transl_elong_EFTs/EF1B	PANTHER	88	237
IPR018101	Transl_elong_Ts_CS	ProSitePatterns	103	113
IPR036402	EF-Ts_dimer_sf	Gene3D	90	224

No CAZYmes available for this sequence

External Links

No external refs found!