Zm00001d011252_T003

Description : telomere repeat binding factor 1

Gene families : OG_01_0003290 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003290_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d011252_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d011252_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_249
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_584

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003691	double-stranded telomeric DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	ISM	GOs from InterProScan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
MF	GO:0042162	telomeric DNA binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005818	Histone_H1/H5_H15	Pfam	128	185
IPR001005	SANT/Myb	SMART	4	59
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	122	199
IPR036388	WH-like_DNA-bd_sf	Gene3D	122	212
IPR017930	Myb_dom	ProSiteProfiles	1	61
IPR009057	Homeobox-like_sf	SUPERFAMILY	2	59
IPR005818	Histone_H1/H5_H15	ProSiteProfiles	124	192
IPR005818	Histone_H1/H5_H15	SMART	124	187
IPR044597	SMH1-6	PANTHER	1	291
IPR001005	SANT/Myb	ProSiteProfiles	5	57
IPR001005	SANT/Myb	Pfam	5	56
IPR017930	Myb_dom	ProSiteProfiles	1	61
IPR005818	Histone_H1/H5_H15	SMART	124	187
IPR044597	SMH1-6	PANTHER	1	299
IPR005818	Histone_H1/H5_H15	ProSiteProfiles	124	192
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	122	199
IPR001005	SANT/Myb	ProSiteProfiles	5	57
IPR009057	Homeobox-like_sf	SUPERFAMILY	2	59
IPR001005	SANT/Myb	SMART	4	59
IPR005818	Histone_H1/H5_H15	Pfam	129	185
IPR036388	WH-like_DNA-bd_sf	Gene3D	122	212
IPR017930	Myb_dom	Pfam	5	56

No CAZYmes available for this sequence

External Links

No external refs found!