Zm00001d011652_T001

Description : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein

Gene families : OG_01_0004208 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004208_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d011652_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d011652_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_146
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_105

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019147	SWAP_N_domain	SMART	1	125
IPR035967	SWAP/Surp_sf	SUPERFAMILY	347	410
IPR035967	SWAP/Surp_sf	Gene3D	155	210
IPR000061	Surp	Pfam	161	209
IPR000061	Surp	Pfam	358	408
IPR000061	Surp	SMART	358	411
IPR000061	Surp	SMART	160	213
IPR000061	Surp	ProSiteProfiles	360	402
IPR040397	SWAP	PANTHER	2	826
IPR019147	SWAP_N_domain	Pfam	2	93
IPR035967	SWAP/Surp_sf	Gene3D	344	416
IPR000061	Surp	ProSiteProfiles	162	204
IPR035967	SWAP/Surp_sf	SUPERFAMILY	138	210
IPR000061	Surp	ProSiteProfiles	162	204
IPR000061	Surp	Pfam	359	408
IPR000061	Surp	Pfam	161	209
IPR019147	SWAP_N_domain	SMART	1	125
IPR000061	Surp	ProSiteProfiles	360	402
IPR035967	SWAP/Surp_sf	Gene3D	155	210
IPR019147	SWAP_N_domain	Pfam	2	93
IPR040397	SWAP	PANTHER	1	827
IPR000061	Surp	SMART	358	411
IPR000061	Surp	SMART	160	213
IPR035967	SWAP/Surp_sf	SUPERFAMILY	347	410
IPR035967	SWAP/Surp_sf	SUPERFAMILY	138	210
IPR035967	SWAP/Surp_sf	Gene3D	344	416

No CAZYmes available for this sequence

External Links

No external refs found!