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  5. Zm00001d011660_T003

Zm00001d011660_T003


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG_01_0006809 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006809_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d011660_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d011660_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_5
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_252


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR013591 Brevis_radix_dom Pfam 984 1037
IPR000408 Reg_chr_condens ProSiteProfiles 444 495
IPR000408 Reg_chr_condens ProSiteProfiles 327 381
IPR011993 PH-like_dom_sf Gene3D 3 122
IPR000306 Znf_FYVE SMART 598 667
IPR000306 Znf_FYVE Pfam 600 666
IPR000408 Reg_chr_condens ProSiteProfiles 382 433
IPR000408 Reg_chr_condens ProSiteProfiles 275 326
IPR000408 Reg_chr_condens ProSiteProfiles 496 547
IPR009091 RCC1/BLIP-II Gene3D 438 598
IPR009091 RCC1/BLIP-II SUPERFAMILY 215 601
IPR013591 Brevis_radix_dom ProSiteProfiles 983 1038
IPR001849 PH_domain ProSiteProfiles 10 114
IPR017455 Znf_FYVE-rel ProSiteProfiles 604 666
IPR011011 Znf_FYVE_PHD SUPERFAMILY 600 669
IPR000408 Reg_chr_condens ProSiteProfiles 548 599
IPR000408 Reg_chr_condens ProSitePatterns 420 430
IPR013083 Znf_RING/FYVE/PHD Gene3D 599 680
IPR000408 Reg_chr_condens Pfam 549 596
IPR000408 Reg_chr_condens Pfam 382 430
IPR000408 Reg_chr_condens Pfam 274 323
IPR000408 Reg_chr_condens Pfam 495 544
IPR000408 Reg_chr_condens Pfam 445 492
IPR000408 Reg_chr_condens Pfam 326 378
IPR009091 RCC1/BLIP-II Gene3D 166 437
IPR027988 BRX_N Pfam 850 886
IPR001849 PH_domain Pfam 5 113
IPR000408 Reg_chr_condens ProSitePatterns 368 378
IPR000408 Reg_chr_condens PRINTS 485 503
IPR000408 Reg_chr_condens PRINTS 327 343
IPR000408 Reg_chr_condens PRINTS 384 398
IPR000408 Reg_chr_condens PRINTS 277 293
IPR000408 Reg_chr_condens PRINTS 543 564
IPR000408 Reg_chr_condens PRINTS 368 384
IPR000306 Znf_FYVE SMART 598 667
IPR013083 Znf_RING/FYVE/PHD Gene3D 599 680
IPR000408 Reg_chr_condens ProSiteProfiles 382 433
IPR017455 Znf_FYVE-rel ProSiteProfiles 604 666
IPR000408 Reg_chr_condens ProSiteProfiles 548 599
IPR009091 RCC1/BLIP-II Gene3D 438 598
IPR013591 Brevis_radix_dom Pfam 984 1037
IPR000408 Reg_chr_condens Pfam 549 596
IPR000408 Reg_chr_condens Pfam 382 430
IPR000408 Reg_chr_condens Pfam 446 492
IPR000408 Reg_chr_condens Pfam 326 378
IPR000408 Reg_chr_condens Pfam 275 323
IPR000408 Reg_chr_condens Pfam 495 544
IPR000408 Reg_chr_condens ProSitePatterns 368 378
IPR011993 PH-like_dom_sf Gene3D 3 122
IPR000408 Reg_chr_condens ProSiteProfiles 496 547
IPR000408 Reg_chr_condens ProSiteProfiles 275 326
IPR001849 PH_domain Pfam 6 113
IPR013591 Brevis_radix_dom ProSiteProfiles 983 1038
IPR001849 PH_domain ProSiteProfiles 10 114
IPR000408 Reg_chr_condens ProSiteProfiles 444 495
IPR000408 Reg_chr_condens ProSiteProfiles 327 381
IPR000306 Znf_FYVE Pfam 600 666
IPR009091 RCC1/BLIP-II Gene3D 166 437
IPR009091 RCC1/BLIP-II SUPERFAMILY 215 601
IPR027988 BRX_N Pfam 850 885
IPR000408 Reg_chr_condens ProSitePatterns 420 430
IPR011011 Znf_FYVE_PHD SUPERFAMILY 600 669
IPR000408 Reg_chr_condens PRINTS 485 503
IPR000408 Reg_chr_condens PRINTS 327 343
IPR000408 Reg_chr_condens PRINTS 384 398
IPR000408 Reg_chr_condens PRINTS 277 293
IPR000408 Reg_chr_condens PRINTS 543 564
IPR000408 Reg_chr_condens PRINTS 368 384

No CAZYmes available for this sequence

No external refs found!