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  5. Zm00001d011900_T001

Zm00001d011900_T001


Description : RNA-binding protein-defense related 1


Gene families : OG_01_0002964 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002964_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d011900_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d011900_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_268


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:1990904 ribonucleoprotein complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 343 454
IPR035979 RBD_domain_sf SUPERFAMILY 130 459
IPR000504 RRM_dom Pfam 132 200
IPR000504 RRM_dom Pfam 34 97
IPR000504 RRM_dom Pfam 379 449
IPR000504 RRM_dom ProSiteProfiles 32 123
IPR035979 RBD_domain_sf SUPERFAMILY 30 97
IPR002343 Hud_Sxl_RNA PRINTS 192 209
IPR002343 Hud_Sxl_RNA PRINTS 135 150
IPR002343 Hud_Sxl_RNA PRINTS 150 162
IPR002343 Hud_Sxl_RNA PRINTS 32 47
IPR000504 RRM_dom ProSiteProfiles 377 455
IPR000504 RRM_dom ProSiteProfiles 130 211
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 22 125
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 126 222
IPR000504 RRM_dom SMART 33 107
IPR000504 RRM_dom SMART 378 451
IPR000504 RRM_dom SMART 131 207
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 22 125
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 126 222
IPR000504 RRM_dom ProSiteProfiles 130 211
IPR035979 RBD_domain_sf SUPERFAMILY 30 97
IPR002343 Hud_Sxl_RNA PRINTS 192 209
IPR002343 Hud_Sxl_RNA PRINTS 135 150
IPR002343 Hud_Sxl_RNA PRINTS 150 162
IPR002343 Hud_Sxl_RNA PRINTS 32 47
IPR000504 RRM_dom Pfam 132 200
IPR000504 RRM_dom Pfam 34 97
IPR000504 RRM_dom Pfam 379 449
IPR035979 RBD_domain_sf SUPERFAMILY 130 459
IPR000504 RRM_dom ProSiteProfiles 377 455
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 343 454
IPR000504 RRM_dom ProSiteProfiles 32 123
IPR000504 RRM_dom SMART 131 207
IPR000504 RRM_dom SMART 378 451
IPR000504 RRM_dom SMART 33 107

No CAZYmes available for this sequence

No external refs found!