Zm00001d012199_T002

Description : CLP protease regulatory subunit X

Gene families : OG_01_0000248 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000248_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d012199_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d012199_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_5
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_219

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006457	protein folding	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	ISM	GOs from InterProScan
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030145	manganese ion binding	ISM	GOs from InterProScan
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0051082	unfolded protein binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003959	ATPase_AAA_core	Pfam	270	488
IPR036189	DCP2_BoxA_sf	SUPERFAMILY	728	817
IPR027417	P-loop_NTPase	Gene3D	200	493
IPR004487	Clp_protease_ATP-bd_su_ClpX	NCBIfam	203	586
IPR036189	DCP2_BoxA_sf	Gene3D	727	819
IPR007722	DCP2_BoxA	SMART	733	817
IPR015797	NUDIX_hydrolase-like_dom_sf	SUPERFAMILY	801	868
IPR007722	DCP2_BoxA	Pfam	734	816
IPR003593	AAA+_ATPase	SMART	269	465
IPR019489	Clp_ATPase_C	SMART	495	585
IPR019489	Clp_ATPase_C	Pfam	495	566
IPR027417	P-loop_NTPase	SUPERFAMILY	203	581
IPR004487	Clp_protease_ATP-bd_su_ClpX	TIGRFAM	203	586
IPR003593	AAA+_ATPase	SMART	269	465
IPR007722	DCP2_BoxA	SMART	733	817
IPR027417	P-loop_NTPase	Gene3D	200	493
IPR003959	ATPase_AAA_core	Pfam	270	488
IPR015797	NUDIX_hydrolase-like_dom_sf	SUPERFAMILY	801	868
IPR019489	Clp_ATPase_C	Pfam	495	568
IPR007722	DCP2_BoxA	Pfam	734	816
IPR036189	DCP2_BoxA_sf	SUPERFAMILY	728	817
IPR027417	P-loop_NTPase	SUPERFAMILY	203	581
IPR036189	DCP2_BoxA_sf	Gene3D	727	819
IPR019489	Clp_ATPase_C	SMART	495	585

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d012199_T002

Expression Profile

Co-expression Networks

Functional Annotation