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  5. Zm00001d012344_T001

Zm00001d012344_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0023667 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0023667_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d012344_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_201


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 240 274
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 275 309
IPR011990 TPR-like_helical_dom_sf Gene3D 232 437
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 84 118
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 135 169
IPR011990 TPR-like_helical_dom_sf Gene3D 59 138
IPR011990 TPR-like_helical_dom_sf Gene3D 1 58
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 9 43
IPR011990 TPR-like_helical_dom_sf Gene3D 139 231
IPR002885 Pentatricopeptide_rpt NCBIfam 210 241
IPR002885 Pentatricopeptide_rpt NCBIfam 242 276
IPR002885 Pentatricopeptide_rpt NCBIfam 11 45
IPR002885 Pentatricopeptide_rpt NCBIfam 277 310
IPR002885 Pentatricopeptide_rpt NCBIfam 172 206
IPR002885 Pentatricopeptide_rpt NCBIfam 138 170
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 170 204
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 205 239
IPR002885 Pentatricopeptide_rpt Pfam 169 218
IPR002885 Pentatricopeptide_rpt Pfam 9 51
IPR002885 Pentatricopeptide_rpt Pfam 239 286
IPR002885 Pentatricopeptide_rpt Pfam 85 132
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 205 239
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 135 169
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 275 309
IPR002885 Pentatricopeptide_rpt Pfam 85 132
IPR002885 Pentatricopeptide_rpt Pfam 239 287
IPR002885 Pentatricopeptide_rpt Pfam 169 218
IPR002885 Pentatricopeptide_rpt Pfam 9 51
IPR002885 Pentatricopeptide_rpt TIGRFAM 210 241
IPR002885 Pentatricopeptide_rpt TIGRFAM 277 310
IPR002885 Pentatricopeptide_rpt TIGRFAM 11 45
IPR002885 Pentatricopeptide_rpt TIGRFAM 172 206
IPR002885 Pentatricopeptide_rpt TIGRFAM 242 276
IPR002885 Pentatricopeptide_rpt TIGRFAM 138 170
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 240 274
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 170 204
IPR011990 TPR-like_helical_dom_sf Gene3D 139 231
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 9 43
IPR011990 TPR-like_helical_dom_sf Gene3D 59 138
IPR011990 TPR-like_helical_dom_sf Gene3D 1 58
IPR011990 TPR-like_helical_dom_sf Gene3D 232 437
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 84 118

No CAZYmes available for this sequence

No external refs found!