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  5. Zm00001d012770_T001

Zm00001d012770_T001


Description : Ribosomal protein S5/Elongation factor G/III/V family protein


Gene families : OG_01_0001427 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001427_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d012770_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d012770_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_215
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_127


Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity ISM GOs from InterProScan
MF GO:0005525 GTP binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000795 T_Tr_GTP-bd_dom Pfam 18 229
IPR041095 EFG_II Pfam 487 549
IPR005517 Transl_elong_EFG/EF2_IV Pfam 610 722
IPR035647 EFG_III/V SUPERFAMILY 484 560
IPR005517 Transl_elong_EFG/EF2_IV SMART 606 722
IPR027417 P-loop_NTPase SUPERFAMILY 4 341
IPR009000 Transl_B-barrel_sf SUPERFAMILY 342 473
IPR005225 Small_GTP-bd_dom NCBIfam 19 168
IPR000640 EFG_V-like Pfam 724 811
IPR020568 Ribosomal_Su5_D2-typ_SF SUPERFAMILY 562 726
IPR000640 EFG_V-like SMART 724 813
IPR035647 EFG_III/V SUPERFAMILY 727 838
IPR027417 P-loop_NTPase Gene3D 3 237
IPR031157 G_TR_CS ProSitePatterns 58 73
IPR000795 T_Tr_GTP-bd_dom ProSiteProfiles 17 344
IPR004161 EFTu-like_2 Pfam 394 462
IPR000795 T_Tr_GTP-bd_dom PRINTS 65 73
IPR000795 T_Tr_GTP-bd_dom PRINTS 153 162
IPR000795 T_Tr_GTP-bd_dom PRINTS 101 111
IPR000795 T_Tr_GTP-bd_dom PRINTS 117 128
IPR000795 T_Tr_GTP-bd_dom PRINTS 21 34
IPR014721 Ribsml_uS5_D2-typ_fold_subgr Gene3D 569 722
IPR009000 Transl_B-barrel_sf SUPERFAMILY 342 473
IPR000640 EFG_V-like Pfam 724 811
IPR027417 P-loop_NTPase SUPERFAMILY 4 341
IPR020568 Ribosomal_Su5_D2-typ_SF SUPERFAMILY 562 726
IPR035647 EFG_III/V SUPERFAMILY 727 838
IPR000795 T_Tr_GTP-bd_dom Pfam 18 342
IPR035647 EFG_III/V SUPERFAMILY 484 560
IPR000640 EFG_V-like SMART 724 813
IPR004161 EFTu-like_2 Pfam 394 467
IPR005225 Small_GTP-bd_dom TIGRFAM 19 168
IPR000795 T_Tr_GTP-bd_dom PRINTS 65 73
IPR000795 T_Tr_GTP-bd_dom PRINTS 153 162
IPR000795 T_Tr_GTP-bd_dom PRINTS 101 111
IPR000795 T_Tr_GTP-bd_dom PRINTS 117 128
IPR000795 T_Tr_GTP-bd_dom PRINTS 21 34
IPR000795 T_Tr_GTP-bd_dom ProSiteProfiles 17 344
IPR014721 Ribsml_uS5_D2-typ_fold_subgr Gene3D 569 722
IPR041095 EFG_II Pfam 487 549
IPR005517 Transl_elong_EFG/EF2_IV SMART 606 722
IPR031157 G_TR_CS ProSitePatterns 58 73
IPR005517 Transl_elong_EFG/EF2_IV Pfam 611 722
IPR027417 P-loop_NTPase Gene3D 3 237

No CAZYmes available for this sequence

No external refs found!