Zm00001d012878_T001

Description : Ribosomal protein S4 (RPS4A) family protein

Gene families : OG_01_0006237 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006237_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d012878_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d012878_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_130

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR032277	Ribosomal_eS4_C	Pfam	212	258
IPR013845	Ribosomal_eS4_central_region	Pfam	95	169
IPR038237	Ribosomal_eS4_central_sf	Gene3D	122	172
IPR018199	Ribosomal_eS4_N_CS	ProSitePatterns	8	22
IPR002942	S4_RNA-bd	Pfam	50	90
IPR000876	Ribosomal_eS4	PIRSF	1	241
IPR000876	Ribosomal_eS4	PANTHER	1	261
IPR014722	Rib_uL2_dom2	Gene3D	175	245
IPR041982	Ribosomal_eS4_KOW	CDD	175	229
IPR000876	Ribosomal_eS4	Hamap	7	238
IPR013843	Ribosomal_eS4_N	Pfam	3	38
IPR036986	S4_RNA-bd_sf	Gene3D	1	117
IPR002942	S4_RNA-bd	SMART	42	106
IPR005824	KOW	SMART	174	201
IPR005824	KOW	Pfam	177	211
IPR005824	KOW	Pfam	177	211
IPR032277	Ribosomal_eS4_C	Pfam	212	258
IPR002942	S4_RNA-bd	CDD	51	112
IPR005824	KOW	SMART	174	201
IPR000876	Ribosomal_eS4	PANTHER	221	263
IPR000876	Ribosomal_eS4	PANTHER	2	220
IPR036986	S4_RNA-bd_sf	Gene3D	1	117
IPR013845	Ribosomal_eS4_central_region	Pfam	95	169
IPR018199	Ribosomal_eS4_N_CS	ProSitePatterns	8	22
IPR041982	Ribosomal_eS4_KOW	CDD	175	229
IPR013843	Ribosomal_eS4_N	Pfam	3	39
IPR014722	Rib_uL2_dom2	Gene3D	175	245
IPR002942	S4_RNA-bd	SMART	42	106
IPR000876	Ribosomal_eS4	PIRSF	1	241
IPR002942	S4_RNA-bd	Pfam	50	90
IPR038237	Ribosomal_eS4_central_sf	Gene3D	122	172
IPR000876	Ribosomal_eS4	Hamap	7	238

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d012878_T001

Expression Profile

Co-expression Networks

Functional Annotation