Zm00001d013006_T007

Description : DNA GYRASE A

Gene families : OG_01_0003124 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003124_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d013006_T007
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d013006_T007
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_291
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_210

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	ISM	GOs from InterProScan
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	ISM	GOs from InterProScan
BP	GO:0006265	DNA topological change	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002205	Topo_IIA_dom_A	SMART	101	557
IPR005743	GyrA	Hamap	86	924
IPR035516	Gyrase/topoIV_suA_C	SUPERFAMILY	592	925
IPR013757	Topo_IIA_A_a_sf	Gene3D	462	550
IPR006691	GyrA/parC_rep	Pfam	819	862
IPR006691	GyrA/parC_rep	Pfam	598	643
IPR006691	GyrA/parC_rep	Pfam	703	744
IPR006691	GyrA/parC_rep	Pfam	751	797
IPR006691	GyrA/parC_rep	Pfam	647	697
IPR006691	GyrA/parC_rep	Pfam	877	922
IPR035516	Gyrase/topoIV_suA_C	Gene3D	590	923
IPR013760	Topo_IIA-like_dom_sf	SUPERFAMILY	121	579
IPR002205	Topo_IIA_dom_A	Pfam	122	563
IPR002205	Topo_IIA_dom_A	CDD	121	563
IPR013758	Topo_IIA_A/C_ab	Gene3D	122	579
IPR002205	Topo_IIA_dom_A	Pfam	122	556
IPR035516	Gyrase/topoIV_suA_C	Gene3D	590	923
IPR013758	Topo_IIA_A/C_ab	Gene3D	122	579
IPR002205	Topo_IIA_dom_A	SMART	101	557
IPR005743	GyrA	Hamap	86	924
IPR002205	Topo_IIA_dom_A	CDD	121	563
IPR035516	Gyrase/topoIV_suA_C	SUPERFAMILY	592	925
IPR013757	Topo_IIA_A_a_sf	Gene3D	462	550
IPR006691	GyrA/parC_rep	Pfam	819	863
IPR006691	GyrA/parC_rep	Pfam	751	797
IPR006691	GyrA/parC_rep	Pfam	647	697
IPR006691	GyrA/parC_rep	Pfam	877	922
IPR006691	GyrA/parC_rep	Pfam	598	640
IPR006691	GyrA/parC_rep	Pfam	703	744
IPR013760	Topo_IIA-like_dom_sf	SUPERFAMILY	121	579

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d013006_T007

Expression Profile

Co-expression Networks

Functional Annotation