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Description : RNA-binding (RRM/RBD/RNP motifs) family protein
Gene families : OG_01_0002121 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002121_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d013058_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d013058_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_235 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 26 | 262 |
| IPR000504 | RRM_dom | ProSiteProfiles | 491 | 574 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 264 | 368 |
| IPR000504 | RRM_dom | ProSiteProfiles | 27 | 105 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 491 | 724 |
| IPR000504 | RRM_dom | ProSiteProfiles | 649 | 742 |
| IPR000504 | RRM_dom | ProSiteProfiles | 276 | 354 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 2 | 116 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 396 | 588 |
| IPR003954 | RRM_dom_euk | SMART | 28 | 101 |
| IPR003954 | RRM_dom_euk | SMART | 277 | 350 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 648 | 740 |
| IPR000504 | RRM_dom | SMART | 492 | 570 |
| IPR000504 | RRM_dom | SMART | 277 | 350 |
| IPR000504 | RRM_dom | SMART | 28 | 101 |
| IPR000504 | RRM_dom | SMART | 650 | 738 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 276 | 357 |
| IPR000504 | RRM_dom | Pfam | 279 | 346 |
| IPR000504 | RRM_dom | Pfam | 493 | 551 |
| IPR000504 | RRM_dom | Pfam | 29 | 99 |
| IPR003954 | RRM_dom_euk | SMART | 28 | 101 |
| IPR003954 | RRM_dom_euk | SMART | 277 | 350 |
| IPR000504 | RRM_dom | SMART | 492 | 570 |
| IPR000504 | RRM_dom | SMART | 277 | 350 |
| IPR000504 | RRM_dom | SMART | 650 | 738 |
| IPR000504 | RRM_dom | SMART | 28 | 101 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 2 | 116 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 396 | 588 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 491 | 724 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 264 | 368 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 648 | 740 |
| IPR000504 | RRM_dom | ProSiteProfiles | 491 | 574 |
| IPR000504 | RRM_dom | Pfam | 493 | 551 |
| IPR000504 | RRM_dom | Pfam | 29 | 99 |
| IPR000504 | RRM_dom | Pfam | 279 | 346 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 26 | 262 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 276 | 357 |
| IPR000504 | RRM_dom | ProSiteProfiles | 27 | 105 |
| IPR000504 | RRM_dom | ProSiteProfiles | 649 | 742 |
| IPR000504 | RRM_dom | ProSiteProfiles | 276 | 354 |
No CAZYmes available for this sequence
| No external refs found! |