Zm00001d013083_T005

Description : exoribonuclease 4

Gene families : OG_01_0008871 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008871_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d013083_T005
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d013083_T005
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_122

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	ISM	GOs from InterProScan
MF	GO:0004532	RNA exonuclease activity	None	Extended
MF	GO:0004534	5'-3' RNA exonuclease activity	ISM	GOs from InterProScan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0008409	5'-3' exonuclease activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016896	RNA exonuclease activity, producing 5'-phosphomonoesters	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001878	Znf_CCHC	Pfam	264	279
IPR041412	Xrn1_helical	Pfam	410	715
IPR041412	Xrn1_helical	Pfam	323	425
IPR001878	Znf_CCHC	ProSiteProfiles	264	279
IPR004859	Xrn1_N	Pfam	1	254
IPR027073	5_3_exoribonuclease	PANTHER	1	966
IPR017151	Xrn2/3/4	PIRSF	1	428
IPR017151	Xrn2/3/4	PIRSF	416	931
IPR001878	Znf_CCHC	SMART	264	280
IPR036875	Znf_CCHC_sf	SUPERFAMILY	260	283
IPR001878	Znf_CCHC	ProSiteProfiles	264	279
IPR017151	Xrn2/3/4	PIRSF	1	428
IPR017151	Xrn2/3/4	PIRSF	416	931
IPR004859	Xrn1_N	Pfam	1	254
IPR027073	5_3_exoribonuclease	PANTHER	1	424
IPR027073	5_3_exoribonuclease	PANTHER	412	761
IPR036875	Znf_CCHC_sf	SUPERFAMILY	260	283
IPR001878	Znf_CCHC	Pfam	264	279
IPR041412	Xrn1_helical	Pfam	410	715
IPR041412	Xrn1_helical	Pfam	323	424
IPR001878	Znf_CCHC	SMART	264	280

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d013083_T005

Expression Profile

Co-expression Networks

Functional Annotation