Zm00001d013392_T001

Description : gamma histone variant H2AX

Gene families : OG_01_0001116 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001116_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d013392_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d013392_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_256
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_45

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
MF	GO:0046982	protein heterodimerization activity	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR032458	Histone_H2A_CS	ProSitePatterns	25	31
IPR032454	Histone_H2A_C	Pfam	95	127
IPR009072	Histone-fold	SUPERFAMILY	20	123
IPR002119	Histone_H2A	CDD	9	123
IPR007125	Histone_H2A/H2B/H3	Pfam	13	92
IPR009072	Histone-fold	Gene3D	3	130
IPR002119	Histone_H2A	PANTHER	13	124
IPR002119	Histone_H2A	SMART	6	126
IPR002119	Histone_H2A	PRINTS	46	61
IPR002119	Histone_H2A	PRINTS	61	74
IPR002119	Histone_H2A	PRINTS	17	39
IPR002119	Histone_H2A	PRINTS	75	89
IPR002119	Histone_H2A	PRINTS	103	121
IPR002119	Histone_H2A	PRINTS	46	61
IPR002119	Histone_H2A	PRINTS	61	74
IPR002119	Histone_H2A	PRINTS	17	39
IPR002119	Histone_H2A	PRINTS	75	89
IPR002119	Histone_H2A	PRINTS	103	121
IPR032454	Histone_H2A_C	Pfam	95	127
IPR002119	Histone_H2A	CDD	9	123
IPR009072	Histone-fold	Gene3D	3	130
IPR007125	Histone_H2A/H2B/H3	Pfam	15	92
IPR002119	Histone_H2A	PANTHER	4	135
IPR009072	Histone-fold	SUPERFAMILY	20	123
IPR002119	Histone_H2A	SMART	6	126
IPR032458	Histone_H2A_CS	ProSitePatterns	25	31

No CAZYmes available for this sequence

External Links

No external refs found!