Zm00001d013538_T001

Description : PIF1 helicase

Gene families : OG_01_0006459 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006459_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d013538_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d013538_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_73
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_2

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006508	proteolysis	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR010285	DNA_helicase_pif1-like	Pfam	1111	1317
IPR027417	P-loop_NTPase	Gene3D	1491	1549
IPR003653	Peptidase_C48_C	ProSiteProfiles	1633	1825
IPR027417	P-loop_NTPase	SUPERFAMILY	1029	1296
IPR003653	Peptidase_C48_C	Pfam	1649	1847
IPR027417	P-loop_NTPase	Gene3D	1107	1283
IPR025476	Helitron_helicase-like	Pfam	484	665
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	1630	1853
IPR049163	Pif1-like_2B_dom	Pfam	1409	1455
IPR027417	P-loop_NTPase	SUPERFAMILY	1244	1544
IPR003653	Peptidase_C48_C	Pfam	1649	1847
IPR027417	P-loop_NTPase	Gene3D	1491	1549
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	1630	1853
IPR027417	P-loop_NTPase	Gene3D	1107	1283
IPR010285	DNA_helicase_pif1-like	Pfam	1111	1454
IPR027417	P-loop_NTPase	SUPERFAMILY	1029	1296
IPR025476	Helitron_helicase-like	Pfam	484	665
IPR003653	Peptidase_C48_C	ProSiteProfiles	1633	1825
IPR027417	P-loop_NTPase	SUPERFAMILY	1244	1544

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d013538_T001

Expression Profile

Co-expression Networks

Functional Annotation