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  5. Zm00001d013688_T001

Zm00001d013688_T001


Description : cyclic nucleotide gated channel 9


Gene families : OG_01_0004690 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004690_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d013688_T001 No neighbors in network
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d013688_T001
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_181


Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity ISM GOs from InterProScan
MF GO:0005249 voltage-gated potassium channel activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006811 monoatomic ion transport ISM GOs from InterProScan
BP GO:0006813 potassium ion transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR014710 RmlC-like_jellyroll Gene3D 482 602
IPR018490 cNMP-bd_dom_sf SUPERFAMILY 413 605
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 620 649
IPR003938 K_chnl_volt-dep_EAG/ELK/ERG PRINTS 142 151
IPR003938 K_chnl_volt-dep_EAG/ELK/ERG PRINTS 447 454
IPR003938 K_chnl_volt-dep_EAG/ELK/ERG PRINTS 397 406
IPR003938 K_chnl_volt-dep_EAG/ELK/ERG PRINTS 379 390
IPR003938 K_chnl_volt-dep_EAG/ELK/ERG PRINTS 259 269
IPR000595 cNMP-bd_dom CDD 484 615
IPR000595 cNMP-bd_dom SMART 484 615
IPR000595 cNMP-bd_dom ProSiteProfiles 484 614
IPR005821 Ion_trans_dom Pfam 89 411
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 620 649
IPR000595 cNMP-bd_dom CDD 484 615
IPR018490 cNMP-bd_dom_sf SUPERFAMILY 413 605
IPR000595 cNMP-bd_dom ProSiteProfiles 484 614
IPR005821 Ion_trans_dom Pfam 87 411
IPR014710 RmlC-like_jellyroll Gene3D 482 602
IPR000595 cNMP-bd_dom SMART 484 615
IPR003938 K_chnl_volt-dep_EAG/ELK/ERG PRINTS 142 151
IPR003938 K_chnl_volt-dep_EAG/ELK/ERG PRINTS 447 454
IPR003938 K_chnl_volt-dep_EAG/ELK/ERG PRINTS 397 406
IPR003938 K_chnl_volt-dep_EAG/ELK/ERG PRINTS 379 390
IPR003938 K_chnl_volt-dep_EAG/ELK/ERG PRINTS 259 269

No CAZYmes available for this sequence

No external refs found!